Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   KU544_RS03400 Genome accession   NZ_CP077897
Coordinates   653503..654072 (-) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 328     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 648503..659072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU544_RS03360 (KU544_03345) - 648977..649585 (-) 609 WP_000020295.1 class I SAM-dependent methyltransferase -
  KU544_RS03365 (KU544_03350) rplL 649760..650128 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  KU544_RS03370 (KU544_03355) rplJ 650171..650671 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  KU544_RS03375 (KU544_03360) rplA 650943..651635 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  KU544_RS03380 (KU544_03365) rplK 651843..652265 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  KU544_RS03385 (KU544_03370) nusG 652446..652994 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  KU544_RS03390 (KU544_03375) secE 653007..653189 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  KU544_RS03395 (KU544_03380) rpmG 653245..653388 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  KU544_RS03400 (KU544_03385) sigH 653503..654072 (-) 570 WP_000872878.1 sigma-70 family RNA polymerase sigma factor Regulator
  KU544_RS03405 (KU544_03390) - 654153..654677 (-) 525 WP_000664731.1 NYN domain-containing protein -
  KU544_RS03410 (KU544_03395) rlmB 654677..655423 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KU544_RS03415 (KU544_03400) - 655431..655835 (-) 405 WP_000370179.1 Mini-ribonuclease 3 -
  KU544_RS03420 (KU544_03405) cysS 655828..657228 (-) 1401 WP_000631980.1 cysteine--tRNA ligase -
  KU544_RS03425 (KU544_03410) cysE 657212..657859 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=584726 KU544_RS03400 WP_000872878.1 653503..654072(-) (sigH) [Staphylococcus aureus strain 328]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=584726 KU544_RS03400 WP_000872878.1 653503..654072(-) (sigH) [Staphylococcus aureus strain 328]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979