Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   KU540_RS13835 Genome accession   NZ_CP077894
Coordinates   2768175..2768744 (-) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 329     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2763175..2773744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU540_RS13795 (KU540_13720) - 2763649..2764257 (-) 609 WP_000020295.1 class I SAM-dependent methyltransferase -
  KU540_RS13800 (KU540_13725) rplL 2764432..2764800 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  KU540_RS13805 (KU540_13730) rplJ 2764843..2765343 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  KU540_RS13810 (KU540_13735) rplA 2765615..2766307 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  KU540_RS13815 (KU540_13740) rplK 2766515..2766937 (-) 423 WP_001085815.1 50S ribosomal protein L11 -
  KU540_RS13820 (KU540_13745) nusG 2767118..2767666 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  KU540_RS13825 (KU540_13750) secE 2767679..2767861 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  KU540_RS13830 (KU540_13755) rpmG 2767917..2768060 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  KU540_RS13835 (KU540_13760) sigH 2768175..2768744 (-) 570 WP_000872878.1 sigma-70 family RNA polymerase sigma factor Regulator
  KU540_RS13840 (KU540_13765) - 2768825..2769349 (-) 525 WP_000664731.1 NYN domain-containing protein -
  KU540_RS13845 (KU540_13770) rlmB 2769349..2770095 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KU540_RS13850 (KU540_13775) - 2770103..2770507 (-) 405 WP_225805999.1 Mini-ribonuclease 3 -
  KU540_RS13855 (KU540_13780) cysS 2770500..2771900 (-) 1401 WP_000631981.1 cysteine--tRNA ligase -
  KU540_RS13860 (KU540_13785) cysE 2771884..2772531 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=584716 KU540_RS13835 WP_000872878.1 2768175..2768744(-) (sigH) [Staphylococcus aureus strain 329]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=584716 KU540_RS13835 WP_000872878.1 2768175..2768744(-) (sigH) [Staphylococcus aureus strain 329]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979