Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   KU540_RS11425 Genome accession   NZ_CP077894
Coordinates   2307607..2308593 (-) Length   328 a.a.
NCBI ID   WP_060649834.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 329     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2302607..2313593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU540_RS11400 (KU540_11335) - 2302867..2303214 (-) 348 WP_225806023.1 hypothetical protein -
  KU540_RS11405 (KU540_11340) - 2303400..2303993 (+) 594 WP_000224614.1 CYTH domain-containing protein -
  KU540_RS11410 (KU540_11345) - 2304097..2304462 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  KU540_RS11415 (KU540_11350) yjbH 2304485..2305291 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  KU540_RS11420 (KU540_11355) pepF 2305751..2307559 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  KU540_RS11425 (KU540_11360) coiA 2307607..2308593 (-) 987 WP_060649834.1 competence protein CoiA Machinery gene
  KU540_RS11430 (KU540_11365) mecA 2308714..2309433 (-) 720 WP_001217728.1 adaptor protein MecA -
  KU540_RS11435 (KU540_11370) spxA 2309804..2310199 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  KU540_RS11440 (KU540_11375) trpS 2310494..2311483 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  KU540_RS11445 (KU540_11380) opp4C 2311527..2312408 (-) 882 WP_225806022.1 oligopeptide ABC transporter permease -
  KU540_RS11450 (KU540_11385) opp4B 2312420..2313382 (-) 963 WP_000593424.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38815.47 Da        Isoelectric Point: 9.7732

>NTDB_id=584710 KU540_RS11425 WP_060649834.1 2307607..2308593(-) (coiA) [Staphylococcus aureus strain 329]
MLVALNEEKERVLATTALRKIKYFCPVCGKQVILKRGLKVISHFAHKHLTEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSIFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSNR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=584710 KU540_RS11425 WP_060649834.1 2307607..2308593(-) (coiA) [Staphylococcus aureus strain 329]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGATAAAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAACGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAACCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATATTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATACTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAAATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.341

100

0.963
  coiA Staphylococcus aureus MW2

96.037

100

0.96