Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KU540_RS05480 Genome accession   NZ_CP077894
Coordinates   1131330..1131725 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 329     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1126330..1136725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU540_RS05450 (KU540_05415) - 1127333..1127737 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  KU540_RS05455 (KU540_05420) - 1128332..1128425 (+) 94 Protein_1066 hypothetical protein -
  KU540_RS05460 (KU540_05425) - 1128557..1128790 (+) 234 WP_000384523.1 DUF1146 family protein -
  KU540_RS05465 (KU540_05430) murA 1128901..1130166 (+) 1266 WP_000358004.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KU540_RS05470 (KU540_05435) fabZ 1130200..1130640 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KU540_RS05475 (KU540_05440) - 1130696..1131136 (-) 441 WP_000846751.1 YwpF-like family protein -
  KU540_RS05480 (KU540_05445) ssb 1131330..1131725 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  KU540_RS05485 (KU540_05450) sceD 1132115..1132810 (+) 696 WP_000752012.1 lytic transglycosylase SceD -
  KU540_RS05490 (KU540_05455) tenA 1133198..1133887 (+) 690 WP_000396067.1 thiaminase II -
  KU540_RS05495 (KU540_05460) thiD 1133880..1134710 (+) 831 WP_000594946.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KU540_RS05500 (KU540_05465) thiM 1134694..1135485 (+) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  KU540_RS05505 (KU540_05470) thiE 1135487..1136128 (+) 642 WP_225805902.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=584685 KU540_RS05480 WP_000932694.1 1131330..1131725(+) (ssb) [Staphylococcus aureus strain 329]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=584685 KU540_RS05480 WP_000932694.1 1131330..1131725(+) (ssb) [Staphylococcus aureus strain 329]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992