Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KU542_RS02505 Genome accession   NZ_CP077893
Coordinates   487349..487744 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 332     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 482349..492744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU542_RS02475 (KU542_02470) - 483608..484012 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  KU542_RS02480 (KU542_02475) - 484350..484442 (+) 93 WP_001790611.1 hypothetical protein -
  KU542_RS02485 (KU542_02480) - 484574..484807 (+) 234 WP_000384523.1 DUF1146 family protein -
  KU542_RS02490 (KU542_02485) murA 484918..486183 (+) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KU542_RS02495 (KU542_02490) fabZ 486217..486657 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KU542_RS02500 (KU542_02495) - 486715..487155 (-) 441 WP_000846746.1 YwpF-like family protein -
  KU542_RS02505 (KU542_02500) ssb 487349..487744 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  KU542_RS02510 (KU542_02505) sceD 488133..488828 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  KU542_RS02515 (KU542_02510) tenA 489214..489903 (+) 690 WP_000396077.1 thiaminase II -
  KU542_RS02520 (KU542_02515) thiD 489896..490726 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KU542_RS02525 (KU542_02520) thiM 490710..491501 (+) 792 WP_050958333.1 hydroxyethylthiazole kinase -
  KU542_RS02530 (KU542_02525) thiE 491503..492144 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=584639 KU542_RS02505 WP_000932694.1 487349..487744(+) (ssb) [Staphylococcus aureus strain 332]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=584639 KU542_RS02505 WP_000932694.1 487349..487744(+) (ssb) [Staphylococcus aureus strain 332]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992