Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   KU522_RS12210 Genome accession   NZ_CP077877
Coordinates   2468194..2468691 (-) Length   165 a.a.
NCBI ID   WP_001789864.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 357     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2463194..2473691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU522_RS12185 (KU522_12180) gcvPB 2463356..2464828 (-) 1473 WP_050956458.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  KU522_RS12190 (KU522_12185) gcvPA 2464821..2466167 (-) 1347 WP_048665334.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  KU522_RS12195 (KU522_12190) gcvT 2466187..2467278 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  KU522_RS12200 (KU522_12195) - 2467437..2467961 (-) 525 WP_001015117.1 shikimate kinase -
  KU522_RS12205 (KU522_12200) - 2467951..2468097 (-) 147 WP_001789879.1 hypothetical protein -
  KU522_RS12210 (KU522_12205) comGF 2468194..2468691 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  KU522_RS12215 (KU522_12210) comGE 2468609..2468908 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  KU522_RS12220 (KU522_12215) comGD 2468895..2469341 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  KU522_RS12225 (KU522_12220) comGC 2469319..2469630 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  KU522_RS12230 (KU522_12225) comGB 2469644..2470714 (-) 1071 Protein_2403 competence type IV pilus assembly protein ComGB -
  KU522_RS12235 (KU522_12230) comGA 2470686..2471660 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  KU522_RS12240 (KU522_12235) - 2471712..2472335 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  KU522_RS12245 (KU522_12240) - 2472332..2472661 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  KU522_RS12250 (KU522_12245) - 2472661..2473647 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19164.88 Da        Isoelectric Point: 10.2192

>NTDB_id=584454 KU522_RS12210 WP_001789864.1 2468194..2468691(-) (comGF) [Staphylococcus aureus strain 357]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=584454 KU522_RS12210 WP_001789864.1 2468194..2468691(-) (comGF) [Staphylococcus aureus strain 357]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

100

100

1
  comGF Staphylococcus aureus N315

96.364

100

0.964