Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HYPDE_RS10695 Genome accession   NC_021172
Coordinates   2237445..2237966 (-) Length   173 a.a.
NCBI ID   WP_015598467.1    Uniprot ID   -
Organism   Hyphomicrobium denitrificans 1NES1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2232445..2242966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYPDE_RS18505 (HYPDE_33828) - 2234770..2235336 (+) 567 WP_015598463.1 PRC-barrel domain-containing protein -
  HYPDE_RS10680 (HYPDE_33833) - 2235477..2235848 (+) 372 WP_041320352.1 c-type cytochrome -
  HYPDE_RS10685 (HYPDE_33838) - 2235869..2236162 (-) 294 WP_041321150.1 hypothetical protein -
  HYPDE_RS10690 (HYPDE_33843) - 2236281..2237234 (+) 954 WP_015598466.1 cation diffusion facilitator family transporter -
  HYPDE_RS10695 (HYPDE_33848) ssb 2237445..2237966 (-) 522 WP_015598467.1 single-stranded DNA-binding protein Machinery gene
  HYPDE_RS10700 (HYPDE_33853) - 2238332..2238700 (+) 369 WP_041320353.1 YkgJ family cysteine cluster protein -
  HYPDE_RS10705 (HYPDE_33858) - 2239364..2239756 (+) 393 WP_041321151.1 GFA family protein -
  HYPDE_RS10710 (HYPDE_33863) - 2239786..2240406 (-) 621 WP_015598470.1 hypothetical protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18514.68 Da        Isoelectric Point: 7.9798

>NTDB_id=58428 HYPDE_RS10695 WP_015598467.1 2237445..2237966(-) (ssb) [Hyphomicrobium denitrificans 1NES1]
MAGSVNKVILVGNVGKDPEIRRTQDGRPIANLSLATSETWRDKQTGERKEKTEWHRVVIFSEPLCKVVEQYVKKGSKLYI
EGALQTRKWTDQSGAEKYSTEVVLQGFNGTLTMLDGAAGGRGSSVGMQESGPDYGTDGGFGQGAGGGEPRRVAKTGGGSK
GSFDKALDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=58428 HYPDE_RS10695 WP_015598467.1 2237445..2237966(-) (ssb) [Hyphomicrobium denitrificans 1NES1]
ATGGCAGGTTCGGTCAACAAGGTCATTCTGGTCGGCAACGTCGGCAAGGACCCCGAAATTCGCCGCACGCAGGACGGGCG
GCCGATTGCCAACCTGAGCTTGGCGACGAGCGAGACGTGGCGCGACAAGCAGACGGGCGAGCGCAAGGAAAAGACGGAGT
GGCATCGCGTCGTCATTTTCAGCGAGCCGCTATGCAAGGTCGTCGAGCAGTATGTGAAGAAAGGCTCGAAGCTTTACATC
GAAGGCGCGCTGCAGACGCGCAAATGGACGGACCAGTCGGGCGCCGAGAAGTACTCGACCGAAGTCGTGCTGCAGGGCTT
CAACGGCACGTTGACGATGCTCGATGGCGCCGCTGGCGGTCGCGGATCGTCGGTCGGCATGCAGGAGAGCGGGCCCGATT
ACGGAACCGACGGCGGCTTCGGCCAGGGTGCGGGCGGGGGCGAACCGCGGCGCGTCGCGAAGACCGGCGGCGGCTCCAAG
GGCAGCTTCGACAAAGCCCTCGACGACGAAATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.425

100

0.497
  ssb Glaesserella parasuis strain SC1401

43.386

100

0.474

Multiple sequence alignment