Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   MX663_RS06245 Genome accession   NZ_CP095736
Coordinates   1211930..1212847 (+) Length   305 a.a.
NCBI ID   WP_021479549.1    Uniprot ID   -
Organism   Bacillus subtilis strain N4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1206930..1217847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX663_RS06225 (MX663_06225) yjbA 1206965..1207717 (+) 753 WP_003239298.1 YjbA family protein -
  MX663_RS06230 (MX663_06230) trpS 1207752..1208744 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  MX663_RS06235 (MX663_06235) oppA 1209334..1210884 (+) 1551 Protein_1164 oligopeptide ABC transporter substrate-binding protein OppA -
  MX663_RS06240 (MX663_06240) oppB 1210991..1211926 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  MX663_RS06245 (MX663_06245) amiD 1211930..1212847 (+) 918 WP_021479549.1 oligopeptide ABC transporter permease OppC Regulator
  MX663_RS06250 (MX663_06250) oppD 1212852..1213928 (+) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  MX663_RS06255 (MX663_06255) oppF 1213930..1214847 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  MX663_RS06260 (MX663_06260) yjbB 1214954..1216171 (+) 1218 WP_247471861.1 MFS transporter -
  MX663_RS06265 (MX663_06265) yjbC 1216335..1216913 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  MX663_RS06270 (MX663_06270) spx 1217094..1217489 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=584098 MX663_RS06245 WP_021479549.1 1211930..1212847(+) (amiD) [Bacillus subtilis strain N4]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIMLIILMAIFAPVFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=584098 MX663_RS06245 WP_021479549.1 1211930..1212847(+) (amiD) [Bacillus subtilis strain N4]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCATGCTCATTA
TCCTTATGGCAATTTTTGCGCCGGTGTTCTCAAGGTATGATTATTCAACTACTAATCTTTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGCACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGAGCGCGAATCTCAAT
CTTTATCGGTGTCGCAGCCGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGAATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTTGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.599

100

0.361
  amiD Streptococcus thermophilus LMD-9

35.599

100

0.361