Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   B1NLA3E_RS16685 Genome accession   NC_021171
Coordinates   3484433..3485191 (-) Length   252 a.a.
NCBI ID   WP_015595009.1    Uniprot ID   N0AY76
Organism   Bacillus sp. 1NLA3E     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3479433..3490191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1NLA3E_RS24235 (B1NLA3E_16045) - 3480320..3480709 (-) 390 WP_015595005.1 DUF188 domain-containing protein -
  B1NLA3E_RS16670 (B1NLA3E_16050) - 3481034..3481849 (-) 816 WP_015595006.1 pyruvate, water dikinase regulatory protein -
  B1NLA3E_RS16675 (B1NLA3E_16055) - 3481881..3482513 (-) 633 WP_187292113.1 helix-turn-helix transcriptional regulator -
  B1NLA3E_RS16680 (B1NLA3E_16060) - 3482735..3484117 (-) 1383 WP_015595008.1 glycine--tRNA ligase -
  B1NLA3E_RS16685 (B1NLA3E_16065) recO 3484433..3485191 (-) 759 WP_015595009.1 DNA repair protein RecO Machinery gene
  B1NLA3E_RS24240 (B1NLA3E_16070) - 3485224..3485367 (-) 144 WP_015595010.1 YqzL family protein -
  B1NLA3E_RS16690 (B1NLA3E_16075) era 3485532..3486452 (-) 921 WP_015595011.1 GTPase Era -
  B1NLA3E_RS16695 (B1NLA3E_16080) - 3486445..3486870 (-) 426 WP_083935125.1 cytidine deaminase -
  B1NLA3E_RS16700 (B1NLA3E_16085) - 3487093..3487476 (-) 384 WP_015595013.1 diacylglycerol kinase family protein -
  B1NLA3E_RS16705 (B1NLA3E_16090) ybeY 3487454..3487924 (-) 471 WP_015595014.1 rRNA maturation RNase YbeY -
  B1NLA3E_RS16710 (B1NLA3E_16095) - 3487921..3490104 (-) 2184 WP_015595015.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28754.34 Da        Isoelectric Point: 7.9350

>NTDB_id=58402 B1NLA3E_RS16685 WP_015595009.1 3484433..3485191(-) (recO) [Bacillus sp. 1NLA3E]
MLQKCEGIVIRTTDYGETNKVVTLYTREWGKIGVMARGAKKPNSRLSAITQLFTYGYFLIQKGSGLGSLQQGEIISSLRS
IREDIFITAYASYVVELTDKATVDEKTPNPFLFELLYQTLNLMNEGYDLDIMANIYEMKMLDLFGLHPCLDQCSVCGNTD
GHFSFSLREGGLICHQCVNKDRYALKITPATVKLLRIFYYFDLSRLGNIDVKAETKAELKKVITAYYDEYSGLHLKTKKF
LNQMDKMRDMLS

Nucleotide


Download         Length: 759 bp        

>NTDB_id=58402 B1NLA3E_RS16685 WP_015595009.1 3484433..3485191(-) (recO) [Bacillus sp. 1NLA3E]
ATGCTTCAAAAATGTGAAGGCATCGTCATTAGAACTACGGATTATGGTGAAACCAATAAGGTTGTCACTCTATATACACG
CGAATGGGGGAAAATTGGTGTGATGGCTCGTGGAGCGAAAAAGCCAAATAGTCGACTTTCAGCTATCACCCAGCTTTTTA
CATATGGATACTTCCTAATTCAAAAAGGAAGTGGATTAGGAAGCCTTCAACAAGGTGAAATAATCTCTTCCCTAAGGTCC
ATTCGCGAGGATATTTTTATTACAGCGTACGCAAGTTATGTTGTTGAATTAACTGATAAAGCAACGGTAGATGAAAAAAC
CCCTAATCCTTTTTTGTTTGAATTGCTTTACCAAACGCTGAACTTAATGAATGAGGGATACGATTTAGATATTATGGCGA
ATATCTATGAGATGAAGATGTTGGATCTTTTCGGCTTACACCCATGTTTAGACCAGTGCTCAGTTTGTGGAAATACAGAT
GGACATTTTTCTTTTTCTCTTAGAGAAGGCGGTTTAATATGTCATCAGTGTGTAAATAAAGATCGGTATGCTTTGAAAAT
TACCCCAGCCACAGTCAAACTTCTAAGGATATTTTATTATTTTGATTTATCACGGTTAGGAAATATTGACGTGAAAGCTG
AAACAAAAGCGGAACTGAAAAAGGTAATAACGGCATATTATGATGAGTATTCCGGTTTACATTTAAAAACAAAAAAATTT
TTAAATCAAATGGATAAAATGAGAGATATGCTATCGTAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N0AY76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

62.948

99.603

0.627

Multiple sequence alignment