Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   B1NLA3E_RS16020 Genome accession   NC_021171
Coordinates   3352425..3354107 (-) Length   560 a.a.
NCBI ID   WP_015594882.1    Uniprot ID   N0B3Q0
Organism   Bacillus sp. 1NLA3E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3347425..3359107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1NLA3E_RS16000 (B1NLA3E_15400) - 3348516..3348761 (+) 246 WP_015594878.1 DUF2627 domain-containing protein -
  B1NLA3E_RS16005 (B1NLA3E_15405) - 3349073..3349801 (-) 729 WP_041580606.1 glycerophosphodiester phosphodiesterase -
  B1NLA3E_RS16010 (B1NLA3E_15410) spo0A 3349934..3350728 (-) 795 WP_015594880.1 sporulation transcription factor Spo0A Regulator
  B1NLA3E_RS16015 (B1NLA3E_15415) spoIVB 3351008..3352297 (-) 1290 WP_041580607.1 SpoIVB peptidase -
  B1NLA3E_RS16020 (B1NLA3E_15420) recN 3352425..3354107 (-) 1683 WP_015594882.1 DNA repair protein RecN Machinery gene
  B1NLA3E_RS16025 (B1NLA3E_15425) argR 3354124..3354573 (-) 450 WP_015594883.1 transcriptional regulator ArgR -
  B1NLA3E_RS16030 (B1NLA3E_15430) - 3354856..3355701 (-) 846 WP_015594884.1 TlyA family RNA methyltransferase -
  B1NLA3E_RS16035 (B1NLA3E_15435) dxs 3355704..3357596 (-) 1893 WP_015594885.1 1-deoxy-D-xylulose-5-phosphate synthase -
  B1NLA3E_RS16040 (B1NLA3E_15440) - 3357924..3358817 (-) 894 WP_041580608.1 farnesyl diphosphate synthase -
  B1NLA3E_RS16045 (B1NLA3E_15445) xseB 3358820..3359053 (-) 234 WP_015594887.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63507.56 Da        Isoelectric Point: 5.4313

>NTDB_id=58399 B1NLA3E_RS16020 WP_015594882.1 3352425..3354107(-) (recN) [Bacillus sp. 1NLA3E]
MLSELSIRNFAIIEELSISFEKGLTVLTGETGAGKSIIIDAIHLLVGGRGSSEFIRHGEEKAEIEGLFLIEDPGHPSFEK
AKEIGVEIEDGMVVLRRDMTRSGKSVCRVNGKLVTIAVLREFGGTLIDIHGQHEHQELMNESKHLSLLDQFGGSNITTAL
LEYQRVYKRYDETLARLKALSENEQKMAHRLDLIQFQLEEIHKADLNLHEDEILFEEKGKLSNFERIFAALQAGYSALSG
EQAGLDWIGMAMGHLENAAELDDEYKEMYESVSNSFYQMEDTIHSLRNKLEVMEYDPRRINEIEERLTEINQLKRKYGKT
IEEILEYAAKIEEEIETIQNKETHIHQLETELASLTKDLRLEAKQMSDLRKKSAKTLSKLIHRELKELYMEKTIFEVNFK
HYDGFYKNGTDIVEFFISTNPGEPLKPLAKIASGGEMSRIMLALKSIFSIHQGVTSIIFDEVDTGVSGRVAQAIGEKIHK
ISNNSQVLCISHLPQVAAMADMHLFITKKTKDGRTKTSVTPLTEKEKIGEISRMISGVEITDLTRQHAEELLHLAHEMKP

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=58399 B1NLA3E_RS16020 WP_015594882.1 3352425..3354107(-) (recN) [Bacillus sp. 1NLA3E]
ATGCTAAGTGAATTATCGATTCGAAACTTTGCTATTATTGAAGAGTTGTCCATTTCATTTGAAAAAGGTTTAACGGTATT
AACCGGTGAAACCGGAGCGGGGAAATCGATTATTATCGATGCCATCCATCTTCTCGTAGGAGGCAGAGGATCTTCTGAGT
TTATTCGACATGGAGAGGAAAAGGCTGAAATCGAAGGACTATTTCTTATAGAAGATCCCGGCCACCCATCTTTTGAGAAA
GCCAAGGAAATTGGAGTCGAAATCGAAGATGGAATGGTGGTTTTACGCAGAGATATGACCCGAAGCGGGAAAAGTGTTTG
CCGTGTAAATGGAAAACTGGTAACAATCGCTGTGTTGCGAGAGTTTGGCGGAACTTTGATTGACATTCATGGTCAACACG
AACATCAAGAACTCATGAATGAATCCAAACACCTATCATTATTAGACCAATTTGGTGGAAGTAATATTACAACAGCTCTT
TTAGAATATCAAAGAGTGTACAAACGATATGATGAGACCTTAGCACGATTAAAAGCACTCAGTGAAAATGAACAAAAAAT
GGCTCACCGGCTTGATTTAATTCAATTTCAGCTTGAAGAAATTCATAAGGCAGATTTGAATTTACACGAGGATGAAATAC
TATTTGAAGAAAAGGGAAAGCTGTCAAATTTCGAAAGAATATTTGCGGCACTTCAGGCAGGATATTCAGCACTTTCTGGG
GAACAGGCTGGTTTAGATTGGATTGGAATGGCCATGGGTCATCTTGAGAATGCTGCCGAGCTGGATGATGAATACAAAGA
GATGTATGAGTCCGTATCAAATAGTTTTTACCAAATGGAGGATACCATTCACTCGTTACGAAATAAACTCGAGGTAATGG
AATACGATCCACGGCGGATAAATGAAATTGAAGAAAGACTGACTGAAATAAATCAACTAAAACGTAAATACGGGAAAACA
ATCGAAGAAATTCTCGAGTATGCAGCTAAAATTGAAGAAGAAATTGAAACAATACAGAACAAAGAAACGCATATTCACCA
GCTTGAAACTGAGCTGGCCTCACTAACAAAAGATTTACGTTTAGAGGCTAAACAAATGAGTGATCTCCGAAAAAAATCCG
CAAAAACTCTTTCTAAGTTAATCCATCGTGAGTTAAAAGAACTCTACATGGAAAAAACAATATTTGAAGTCAATTTTAAG
CATTATGACGGATTTTATAAGAATGGAACAGATATTGTTGAGTTTTTCATTTCAACGAACCCCGGTGAGCCATTGAAGCC
TTTAGCAAAAATCGCCTCTGGTGGAGAAATGTCTCGTATCATGCTGGCATTGAAAAGTATTTTTTCTATTCATCAAGGAG
TAACATCTATTATCTTTGATGAAGTTGATACTGGAGTTAGCGGAAGAGTGGCACAGGCTATTGGAGAAAAAATACACAAA
ATCTCAAATAATTCACAGGTTCTTTGTATTTCACATTTACCGCAAGTTGCGGCAATGGCGGACATGCATCTGTTTATTAC
CAAGAAAACAAAGGACGGAAGAACAAAAACTTCAGTCACTCCTTTAACGGAAAAGGAGAAAATTGGAGAAATTAGCAGAA
TGATTTCTGGAGTGGAAATTACTGATTTAACAAGGCAACATGCAGAGGAATTATTGCATTTAGCCCACGAAATGAAGCCA
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N0B3Q0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.324

100

0.629

Multiple sequence alignment