Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MW396_RS04830 Genome accession   NZ_CP095538
Coordinates   976172..976909 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain GN04592     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 971172..981909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW396_RS04800 (MW396_04800) yfiL 971331..971696 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  MW396_RS04805 (MW396_04805) aroF 971905..972975 (+) 1071 WP_001168043.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  MW396_RS04810 (MW396_04810) tyrA 972986..974107 (+) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  MW396_RS04815 (MW396_04815) pheA 974150..975310 (-) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  MW396_RS04820 (MW396_04820) pheL 975409..975456 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  MW396_RS04825 (MW396_04825) raiA 975560..975901 (-) 342 WP_000178463.1 ribosome-associated translation inhibitor RaiA -
  MW396_RS04830 (MW396_04830) comL 976172..976909 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  MW396_RS04835 (MW396_04835) rluD 977044..978024 (+) 981 WP_000079106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MW396_RS04840 (MW396_04840) yfiH 978021..978752 (+) 732 WP_000040163.1 purine nucleoside phosphorylase YfiH -
  MW396_RS04845 (MW396_04845) clpC 978882..981455 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=583904 MW396_RS04830 WP_000197686.1 976172..976909(-) (comL) [Escherichia coli strain GN04592]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=583904 MW396_RS04830 WP_000197686.1 976172..976909(-) (comL) [Escherichia coli strain GN04592]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAACCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376