Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   B1NLA3E_RS00535 Genome accession   NC_021171
Coordinates   105380..106759 (+) Length   459 a.a.
NCBI ID   WP_015591931.1    Uniprot ID   -
Organism   Bacillus sp. 1NLA3E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100380..111759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1NLA3E_RS00520 (B1NLA3E_00385) - 100780..101328 (+) 549 WP_015591928.1 UvrB/UvrC motif-containing protein -
  B1NLA3E_RS00525 (B1NLA3E_00390) - 101330..102403 (+) 1074 WP_015591929.1 protein arginine kinase -
  B1NLA3E_RS00530 (B1NLA3E_00395) clpC 102415..104856 (+) 2442 WP_015591930.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  B1NLA3E_RS00535 (B1NLA3E_00400) radA 105380..106759 (+) 1380 WP_015591931.1 DNA repair protein RadA Machinery gene
  B1NLA3E_RS00540 (B1NLA3E_00405) - 107049..108134 (+) 1086 WP_015591932.1 PIN/TRAM domain-containing protein -
  B1NLA3E_RS00545 (B1NLA3E_00410) ispD 108151..108843 (+) 693 WP_015591933.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  B1NLA3E_RS00550 (B1NLA3E_00415) ispF 108979..109458 (+) 480 WP_015591934.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  B1NLA3E_RS00555 (B1NLA3E_00420) gltX 109523..110983 (+) 1461 WP_015591935.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49711.16 Da        Isoelectric Point: 7.0714

>NTDB_id=58381 B1NLA3E_RS00535 WP_015591931.1 105380..106759(+) (radA) [Bacillus sp. 1NLA3E]
MAKRKTKFMCQECGYESPKWMGKCPGCGEWNKMVEEVEVVGTGKRGAFTHSQGLAGGSKATPITSIETGTEVRIQTNLKE
LNRVLGGGIVRGSLVLIGGDPGIGKSTLLLQVSSQLAVQGQSVLYISGEESLRQTKLRAERLGVTSENLLVYAETNLDEI
SRTIESISPSFVIIDSIQTVFHPDVTSAPGSVSQVRECTSELMRIGKTKGIAVFIVGHVTKEGSIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKEMGLEEVENPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPTS
FGNPRRMATGIDHNRVSLLMAVLEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDSPTRATDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFERIILPENNLGGWKCPKGIELIGVSSVQQALQATLGK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=58381 B1NLA3E_RS00535 WP_015591931.1 105380..106759(+) (radA) [Bacillus sp. 1NLA3E]
ATGGCAAAGAGGAAGACAAAGTTTATGTGTCAAGAGTGTGGGTATGAATCTCCAAAGTGGATGGGGAAATGTCCTGGTTG
TGGTGAGTGGAACAAAATGGTTGAGGAAGTTGAGGTTGTTGGAACAGGAAAAAGAGGTGCTTTTACTCATTCCCAAGGGT
TAGCAGGCGGGTCAAAGGCAACTCCAATCACTTCGATTGAAACAGGGACTGAAGTTAGAATACAAACCAATTTAAAAGAG
CTAAATCGGGTGTTAGGTGGCGGGATTGTTCGAGGATCGTTAGTTCTGATTGGAGGAGACCCTGGAATAGGGAAATCAAC
CTTGCTTTTACAGGTATCCTCACAATTAGCTGTGCAGGGTCAATCTGTATTATATATTTCTGGAGAAGAATCGCTAAGAC
AAACGAAACTGAGGGCTGAGCGACTAGGTGTAACTTCTGAAAACCTTTTGGTTTATGCTGAAACAAATCTTGATGAAATA
AGCAGGACGATTGAGAGCATATCGCCAAGCTTTGTTATCATAGACTCGATTCAAACCGTATTTCACCCAGATGTAACATC
CGCACCTGGAAGTGTTTCGCAGGTTCGGGAATGTACATCAGAATTAATGAGGATTGGAAAAACTAAGGGGATTGCTGTTT
TCATTGTAGGACATGTGACTAAAGAAGGTTCAATCGCTGGGCCACGGTTGCTAGAGCATATGGTAGATACTGTTCTTTAT
TTTGAAGGAGAGAGGCATCATACCTATCGTATATTACGTGCTGTAAAAAATCGCTTCGGTTCGACAAATGAAATGGGTAT
TTTTGAAATGAAAGAAATGGGTCTTGAAGAAGTTGAAAATCCATCTGAAATTTTTTTAGAGGAGCGATCCCAAGGGGCAG
CAGGATCAACTGTTGTAGCATCGATGGAAGGGACTCGACCTGTACTTGTTGAAATACAAGCATTAATTTCTCCGACAAGC
TTTGGAAATCCAAGAAGAATGGCAACTGGAATTGATCATAACCGTGTATCACTTCTAATGGCAGTTTTAGAGAAACGAGT
GGGGATGCTTTTGCAAAATCAGGATGCCTACCTTAAGGTTGCGGGTGGGGTGAAGCTTGATGAACCAGCAATCGATTTAG
CAGTTGCGGTTAGCATTGCTTCAAGTTTTCGCGATTCCCCAACAAGGGCTACGGATTGTATTATTGGAGAAGTAGGCTTA
ACAGGAGAAGTACGAAGAGTTTCAAGAATAGAGCAACGGGTTCAGGAAGCAGCAAAATTAGGATTTGAACGAATTATTCT
CCCTGAGAACAATCTAGGTGGCTGGAAATGTCCGAAAGGGATTGAATTAATCGGGGTTTCCTCAGTTCAGCAAGCGTTAC
AAGCAACTTTAGGTAAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

AAA domain (AAA_25)

(72-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75.599

100

0.756
  radA Streptococcus pneumoniae Rx1

62.5

100

0.632
  radA Streptococcus pneumoniae D39

62.5

100

0.632
  radA Streptococcus pneumoniae R6

62.5

100

0.632
  radA Streptococcus pneumoniae TIGR4

62.5

100

0.632
  radA Streptococcus mitis NCTC 12261

62.5

100

0.632
  radA Streptococcus mitis SK321

62.284

100

0.63

Multiple sequence alignment