Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MW397_RS17050 Genome accession   NZ_CP095529
Coordinates   3592321..3593058 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain GN06156     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3587321..3598058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW397_RS17035 (MW397_17025) clpC 3587775..3590348 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  MW397_RS17040 (MW397_17030) yfiH 3590478..3591209 (-) 732 WP_000040163.1 purine nucleoside phosphorylase YfiH -
  MW397_RS17045 (MW397_17035) rluD 3591206..3592186 (-) 981 WP_000079106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MW397_RS17050 (MW397_17040) comL 3592321..3593058 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  MW397_RS17055 (MW397_17045) raiA 3593329..3593670 (+) 342 WP_000178463.1 ribosome-associated translation inhibitor RaiA -
  MW397_RS17060 (MW397_17050) pheL 3593774..3593821 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  MW397_RS17065 (MW397_17055) pheA 3593920..3595080 (+) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  MW397_RS17070 (MW397_17060) tyrA 3595123..3596244 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  MW397_RS17075 (MW397_17065) aroF 3596255..3597325 (-) 1071 WP_001168043.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  MW397_RS17080 (MW397_17070) yfiL 3597534..3597899 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=583771 MW397_RS17050 WP_000197686.1 3592321..3593058(+) (comL) [Escherichia coli strain GN06156]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=583771 MW397_RS17050 WP_000197686.1 3592321..3593058(+) (comL) [Escherichia coli strain GN06156]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAACCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376