Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MW405_RS17105 Genome accession   NZ_CP095518
Coordinates   3582018..3582755 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain GN02350     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3577018..3587755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW405_RS17080 (MW405_17080) tyrA 3577394..3578515 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  MW405_RS17085 (MW405_17085) pheA 3578558..3579718 (-) 1161 WP_000200107.1 bifunctional chorismate mutase/prephenate dehydratase -
  MW405_RS17090 (MW405_17090) pheL 3579817..3579864 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  MW405_RS17095 (MW405_17095) raiA 3579968..3580309 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  MW405_RS17100 (MW405_17100) - 3580622..3581968 (+) 1347 WP_000483767.1 IS4-like element IS4 family transposase -
  MW405_RS17105 (MW405_17105) comL 3582018..3582755 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  MW405_RS17110 (MW405_17110) rluD 3582890..3583870 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MW405_RS17115 (MW405_17115) yfiH 3583867..3584598 (+) 732 WP_000040137.1 purine nucleoside phosphorylase YfiH -
  MW405_RS17120 (MW405_17120) clpC 3584728..3587301 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=583538 MW405_RS17105 WP_000197686.1 3582018..3582755(-) (comL) [Escherichia coli strain GN02350]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=583538 MW405_RS17105 WP_000197686.1 3582018..3582755(-) (comL) [Escherichia coli strain GN02350]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376