Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MW398_RS07970 Genome accession   NZ_CP095505
Coordinates   1399001..1399738 (+) Length   245 a.a.
NCBI ID   WP_021524442.1    Uniprot ID   -
Organism   Escherichia coli strain GN02050     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1394001..1404738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW398_RS07955 (MW398_07945) clpC 1394455..1397028 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  MW398_RS07960 (MW398_07950) yfiH 1397158..1397889 (-) 732 WP_021524441.1 purine nucleoside phosphorylase YfiH -
  MW398_RS07965 (MW398_07955) rluD 1397886..1398866 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MW398_RS07970 (MW398_07960) comL 1399001..1399738 (+) 738 WP_021524442.1 outer membrane protein assembly factor BamD Machinery gene
  MW398_RS07975 (MW398_07965) - 1399788..1401134 (-) 1347 WP_000483767.1 IS4-like element IS4 family transposase -
  MW398_RS07980 (MW398_07970) raiA 1401447..1401788 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  MW398_RS07985 (MW398_07975) pheL 1401892..1401939 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  MW398_RS07990 (MW398_07980) pheA 1402038..1403198 (+) 1161 WP_000200107.1 bifunctional chorismate mutase/prephenate dehydratase -
  MW398_RS07995 (MW398_07985) tyrA 1403241..1404362 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27855.48 Da        Isoelectric Point: 6.4874

>NTDB_id=583225 MW398_RS07970 WP_021524442.1 1399001..1399738(+) (comL) [Escherichia coli strain GN02050]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NISNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=583225 MW398_RS07970 WP_021524442.1 1399001..1399738(+) (comL) [Escherichia coli strain GN02050]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACATCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

37.903

100

0.384
  comL Neisseria gonorrhoeae MS11

37.097

100

0.376