Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MWN60_RS00925 Genome accession   NZ_CP095467
Coordinates   207370..207978 (+) Length   202 a.a.
NCBI ID   WP_064964524.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0569     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 202370..212978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWN60_RS00920 (MWN60_00920) - 202530..206936 (+) 4407 WP_260061692.1 S8 family serine peptidase -
  MWN60_RS00925 (MWN60_00925) recR 207370..207978 (+) 609 WP_064964524.1 recombination mediator RecR Machinery gene
  MWN60_RS00930 (MWN60_00930) - 207985..208842 (+) 858 WP_064964523.1 glycosyltransferase family 2 protein -
  MWN60_RS00935 (MWN60_00935) secG 208881..209243 (-) 363 WP_004919074.1 preprotein translocase subunit SecG -
  MWN60_RS00940 (MWN60_00940) - 209386..211428 (-) 2043 WP_049589082.1 pitrilysin family protein -
  MWN60_RS00945 (MWN60_00945) - 211441..212754 (-) 1314 WP_064970145.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22426.73 Da        Isoelectric Point: 4.9948

>NTDB_id=583162 MWN60_RS00925 WP_064964524.1 207370..207978(+) (recR) [Riemerella anatipestifer strain RCAD0569]
MNFPSKVLEKAVEEISGLPGIGRKSALRLALHLLRQPSSQGIALGEAIQNLVTEIKYCKECHNFSDTDICEICADDSRHA
ELLCVVEDVRDVMAIENTGKFKGKYLVLGGKISPMEGIGPQQLNIETLESKLETGEIEEVIFALSATMEGDTTVYYLYKK
FKHFDIKFSNIARGISVGDELEYADEVSLGRSILNRIPYKGH

Nucleotide


Download         Length: 609 bp        

>NTDB_id=583162 MWN60_RS00925 WP_064964524.1 207370..207978(+) (recR) [Riemerella anatipestifer strain RCAD0569]
ATGAATTTTCCAAGTAAGGTTTTAGAAAAGGCAGTAGAAGAAATATCGGGACTTCCAGGGATAGGTAGAAAATCAGCTCT
TAGGCTAGCACTTCATTTGCTTAGACAACCGAGTTCACAAGGAATAGCTCTAGGTGAGGCTATACAAAATCTAGTTACAG
AGATAAAATATTGTAAAGAATGCCATAACTTTTCGGACACAGATATTTGCGAAATTTGTGCAGATGACAGTAGACACGCT
GAACTCCTATGCGTTGTGGAAGATGTGAGAGATGTAATGGCGATAGAAAACACAGGAAAATTCAAAGGAAAATATTTGGT
TTTAGGAGGAAAAATATCGCCTATGGAAGGTATTGGACCTCAACAATTAAATATAGAAACTTTAGAAAGCAAACTAGAAA
CAGGAGAGATAGAGGAGGTGATTTTTGCTCTGTCTGCCACTATGGAAGGCGACACCACCGTGTATTATTTGTATAAAAAG
TTTAAGCATTTTGACATTAAATTCTCCAATATTGCGAGAGGGATTTCCGTAGGAGATGAACTAGAGTACGCCGATGAAGT
TTCTTTGGGGAGGTCTATTTTGAACCGAATACCTTATAAAGGTCATTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-78)

Toprim domain (Toprim_4)

(83-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.837

97.03

0.406
  recR Streptococcus pneumoniae R6

41.206

98.515

0.406
  recR Bacillus subtilis subsp. subtilis str. 168

38.776

97.03

0.376