Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KTR68_RS12880 Genome accession   NZ_CP077757
Coordinates   2623802..2624197 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain WHC07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2618802..2629197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTR68_RS12850 - 2620060..2620464 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  KTR68_RS12855 - 2620802..2620894 (+) 93 WP_001790611.1 hypothetical protein -
  KTR68_RS12860 - 2621026..2621259 (+) 234 WP_000384523.1 DUF1146 family protein -
  KTR68_RS12865 murA 2621370..2622635 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KTR68_RS12870 fabZ 2622669..2623109 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KTR68_RS12875 - 2623168..2623608 (-) 441 WP_000846746.1 YwpF-like family protein -
  KTR68_RS12880 ssb 2623802..2624197 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  KTR68_RS12885 sceD 2624585..2625280 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  KTR68_RS12890 tenA 2625804..2626493 (+) 690 WP_000396077.1 thiaminase II -
  KTR68_RS12895 thiD 2626486..2627316 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KTR68_RS12900 thiM 2627300..2628100 (+) 801 WP_031590212.1 hydroxyethylthiazole kinase -
  KTR68_RS12905 thiE 2628093..2628734 (+) 642 WP_000483155.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=582809 KTR68_RS12880 WP_000932694.1 2623802..2624197(+) (ssb) [Staphylococcus aureus strain WHC07]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=582809 KTR68_RS12880 WP_000932694.1 2623802..2624197(+) (ssb) [Staphylococcus aureus strain WHC07]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992