Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   KTR68_RS06805 Genome accession   NZ_CP077757
Coordinates   1386878..1387447 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain WHC07     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1381878..1392447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTR68_RS06765 - 1382352..1382960 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  KTR68_RS06770 rplL 1383135..1383503 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  KTR68_RS06775 rplJ 1383546..1384046 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  KTR68_RS06780 rplA 1384318..1385010 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  KTR68_RS06785 rplK 1385218..1385640 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  KTR68_RS06790 nusG 1385821..1386369 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  KTR68_RS06795 secE 1386382..1386564 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  KTR68_RS06800 rpmG 1386620..1386763 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  KTR68_RS06805 sigH 1386878..1387447 (-) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  KTR68_RS06810 - 1387528..1388052 (-) 525 WP_000664738.1 NYN domain-containing protein -
  KTR68_RS06815 rlmB 1388052..1388798 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KTR68_RS06820 - 1388806..1389210 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  KTR68_RS06825 cysS 1389203..1390603 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  KTR68_RS06830 cysE 1390587..1391234 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=582799 KTR68_RS06805 WP_000872876.1 1386878..1387447(-) (sigH) [Staphylococcus aureus strain WHC07]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=582799 KTR68_RS06805 WP_000872876.1 1386878..1387447(-) (sigH) [Staphylococcus aureus strain WHC07]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984