Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   KTR68_RS04875 Genome accession   NZ_CP077757
Coordinates   990855..991841 (-) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain WHC07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 985855..996841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTR68_RS04850 - 986115..986462 (-) 348 WP_031589545.1 hypothetical protein -
  KTR68_RS04855 - 986648..987241 (+) 594 WP_000224611.1 CYTH domain-containing protein -
  KTR68_RS04860 - 987345..987710 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  KTR68_RS04865 yjbH 987733..988539 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  KTR68_RS04870 pepF 988999..990807 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  KTR68_RS04875 coiA 990855..991841 (-) 987 WP_000959292.1 competence protein CoiA Machinery gene
  KTR68_RS04880 mecA 991962..992681 (-) 720 WP_001217723.1 adaptor protein MecA -
  KTR68_RS04885 spxA 993052..993447 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  KTR68_RS04890 trpS 993742..994731 (+) 990 WP_031589556.1 tryptophan--tRNA ligase -
  KTR68_RS04895 opp4C 994773..995654 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  KTR68_RS04900 opp4B 995666..996628 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=582794 KTR68_RS04875 WP_000959292.1 990855..991841(-) (coiA) [Staphylococcus aureus strain WHC07]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=582794 KTR68_RS04875 WP_000959292.1 990855..991841(-) (coiA) [Staphylococcus aureus strain WHC07]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976