Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KTR65_RS13090 Genome accession   NZ_CP077755
Coordinates   2660959..2661354 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain WHC09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2655959..2666354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTR65_RS13060 - 2657217..2657621 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  KTR65_RS13065 - 2657959..2658051 (+) 93 WP_001790611.1 hypothetical protein -
  KTR65_RS13070 - 2658183..2658416 (+) 234 WP_000384523.1 DUF1146 family protein -
  KTR65_RS13075 murA 2658527..2659792 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KTR65_RS13080 fabZ 2659826..2660266 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KTR65_RS13085 - 2660325..2660765 (-) 441 WP_000846746.1 YwpF-like family protein -
  KTR65_RS13090 ssb 2660959..2661354 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  KTR65_RS13095 sceD 2661742..2662437 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  KTR65_RS13100 tenA 2662961..2663650 (+) 690 WP_000396077.1 thiaminase II -
  KTR65_RS13105 thiD 2663643..2664473 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KTR65_RS13110 thiM 2664457..2665257 (+) 801 WP_031590212.1 hydroxyethylthiazole kinase -
  KTR65_RS13115 thiE 2665250..2665891 (+) 642 WP_000483155.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=582767 KTR65_RS13090 WP_000932694.1 2660959..2661354(+) (ssb) [Staphylococcus aureus strain WHC09]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=582767 KTR65_RS13090 WP_000932694.1 2660959..2661354(+) (ssb) [Staphylococcus aureus strain WHC09]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992