Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   KTR65_RS06760 Genome accession   NZ_CP077755
Coordinates   1378131..1378700 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain WHC09     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1373131..1383700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTR65_RS06720 - 1373605..1374213 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  KTR65_RS06725 rplL 1374388..1374756 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  KTR65_RS06730 rplJ 1374799..1375299 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  KTR65_RS06735 rplA 1375571..1376263 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  KTR65_RS06740 rplK 1376471..1376893 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  KTR65_RS06745 nusG 1377074..1377622 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  KTR65_RS06750 secE 1377635..1377817 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  KTR65_RS06755 rpmG 1377873..1378016 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  KTR65_RS06760 sigH 1378131..1378700 (-) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  KTR65_RS06765 - 1378781..1379305 (-) 525 WP_000664738.1 NYN domain-containing protein -
  KTR65_RS06770 rlmB 1379305..1380051 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KTR65_RS06775 - 1380059..1380463 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  KTR65_RS06780 cysS 1380456..1381856 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  KTR65_RS06785 cysE 1381840..1382487 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=582757 KTR65_RS06760 WP_000872876.1 1378131..1378700(-) (sigH) [Staphylococcus aureus strain WHC09]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=582757 KTR65_RS06760 WP_000872876.1 1378131..1378700(-) (sigH) [Staphylococcus aureus strain WHC09]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984