Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   KTR65_RS04835 Genome accession   NZ_CP077755
Coordinates   983570..984556 (-) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain WHC09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 978570..989556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTR65_RS04810 - 978830..979177 (-) 348 WP_031589545.1 hypothetical protein -
  KTR65_RS04815 - 979363..979956 (+) 594 WP_000224611.1 CYTH domain-containing protein -
  KTR65_RS04820 - 980060..980425 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  KTR65_RS04825 yjbH 980448..981254 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  KTR65_RS04830 pepF 981714..983522 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  KTR65_RS04835 coiA 983570..984556 (-) 987 WP_000959292.1 competence protein CoiA Machinery gene
  KTR65_RS04840 mecA 984677..985396 (-) 720 WP_001217723.1 adaptor protein MecA -
  KTR65_RS04845 spxA 985767..986162 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  KTR65_RS04850 trpS 986457..987446 (+) 990 WP_031589556.1 tryptophan--tRNA ligase -
  KTR65_RS04855 opp4C 987488..988369 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  KTR65_RS04860 opp4B 988381..989343 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=582752 KTR65_RS04835 WP_000959292.1 983570..984556(-) (coiA) [Staphylococcus aureus strain WHC09]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=582752 KTR65_RS04835 WP_000959292.1 983570..984556(-) (coiA) [Staphylococcus aureus strain WHC09]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976