Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   KTE72_RS03050 Genome accession   NZ_CP077741
Coordinates   633225..633794 (+) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NL1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 628225..638794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTE72_RS03025 (KTE72_03005) cysE 629437..630084 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  KTE72_RS03030 (KTE72_03010) cysS 630068..631468 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  KTE72_RS03035 (KTE72_03015) - 631461..631865 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  KTE72_RS03040 (KTE72_03020) rlmB 631873..632619 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KTE72_RS03045 (KTE72_03025) - 632619..633143 (+) 525 WP_000664738.1 NYN domain-containing protein -
  KTE72_RS03050 (KTE72_03030) sigH 633225..633794 (+) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  KTE72_RS03055 (KTE72_03035) rpmG 633909..634052 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  KTE72_RS03060 (KTE72_03040) secE 634108..634290 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  KTE72_RS03065 (KTE72_03045) nusG 634303..634851 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  KTE72_RS03070 (KTE72_03050) rplK 635032..635454 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  KTE72_RS03075 (KTE72_03055) rplA 635662..636354 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  KTE72_RS03080 (KTE72_03060) rplJ 636626..637126 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  KTE72_RS03085 (KTE72_03065) rplL 637169..637537 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  KTE72_RS03090 (KTE72_03070) - 637712..638320 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=582598 KTE72_RS03050 WP_000872866.1 633225..633794(+) (sigH) [Staphylococcus aureus strain NL1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=582598 KTE72_RS03050 WP_000872866.1 633225..633794(+) (sigH) [Staphylococcus aureus strain NL1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974