Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DAX88_RS15500 Genome accession   NZ_CP077710
Coordinates   3233890..3234495 (-) Length   201 a.a.
NCBI ID   WP_023247034.1    Uniprot ID   A0A8F0CF37
Organism   Salmonella enterica subsp. enterica strain CFSAN058540     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3228890..3239495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAX88_RS15485 (DAX88_015485) helD 3229107..3231161 (-) 2055 WP_023247032.1 DNA helicase IV -
  DAX88_RS15490 (DAX88_015490) - 3231285..3231731 (+) 447 WP_001261216.1 YccF domain-containing protein -
  DAX88_RS15495 (DAX88_015495) yccS 3231750..3233903 (+) 2154 WP_023247033.1 YccS family putative transporter -
  DAX88_RS15500 (DAX88_015500) sxy/tfoX 3233890..3234495 (-) 606 WP_023247034.1 TfoX/Sxy family DNA transformation protein Regulator
  DAX88_RS15505 (DAX88_015505) sulA 3234712..3235221 (+) 510 WP_023247035.1 SOS-induced cell division inhibitor SulA -
  DAX88_RS15510 (DAX88_015510) ompA 3235578..3236630 (+) 1053 WP_063390952.1 porin OmpA -
  DAX88_RS15515 (DAX88_015515) matP 3236702..3237154 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  DAX88_RS15520 (DAX88_015520) - 3237340..3239100 (+) 1761 WP_023247037.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23157.89 Da        Isoelectric Point: 9.0103

>NTDB_id=582467 DAX88_RS15500 WP_023247034.1 3233890..3234495(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain CFSAN058540]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRVLGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=582467 DAX88_RS15500 WP_023247034.1 3233890..3234495(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain CFSAN058540]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCCTT
ATTCGGCAGCTATAGTCTGACCGTGGAAGATACCGTCTTTGCGATGGTGGCTAACGGCGAGCTTTATCTCCGCGCCTGTG
AGCAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGTCTGGCTCACATTTATGAAGTGTGGACGCCCTGTTATGCTCAAC
TATTATCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAATATGTTACGCGTACTGGGTGCAAAAATGTGCTGGCTAAGGTTGCGACAAAGTAAT
CCTTTGCTGACGGTAAAAGTTCTGTATGCGTTAGAAGGCGCAATTGTTGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGATTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.884

99.005

0.761