Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KS461_RS08820 Genome accession   NZ_CP077678
Coordinates   1946025..1946660 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis strain X8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1941025..1951660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KS461_RS08800 (KS461_08790) - 1941270..1942202 (+) 933 WP_038580920.1 ABC transporter ATP-binding protein -
  KS461_RS08805 (KS461_08795) - 1942199..1942978 (+) 780 WP_007931651.1 ABC transporter permease -
  KS461_RS08810 (KS461_08800) - 1943027..1943542 (-) 516 WP_096373426.1 DUF2062 domain-containing protein -
  KS461_RS08815 (KS461_08805) comA 1943691..1945922 (+) 2232 WP_258256909.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KS461_RS08820 (KS461_08810) exbB 1946025..1946660 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KS461_RS08825 (KS461_08815) - 1946657..1947085 (+) 429 WP_009047818.1 biopolymer transporter ExbD -
  KS461_RS08830 (KS461_08820) lpxK 1947085..1948095 (+) 1011 WP_258256910.1 tetraacyldisaccharide 4'-kinase -
  KS461_RS08835 (KS461_08825) - 1948119..1948304 (+) 186 WP_007931663.1 Trm112 family protein -
  KS461_RS08840 (KS461_08830) kdsB 1948301..1949065 (+) 765 WP_016702178.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KS461_RS08845 (KS461_08835) - 1949065..1949529 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  KS461_RS08850 (KS461_08840) murB 1949526..1950545 (+) 1020 WP_258256912.1 UDP-N-acetylmuramate dehydrogenase -
  KS461_RS08855 (KS461_08845) - 1950794..1951264 (+) 471 WP_038580901.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=582142 KS461_RS08820 WP_007931657.1 1946025..1946660(+) (exbB) [Pseudomonas chlororaphis strain X8]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=582142 KS461_RS08820 WP_007931657.1 1946025..1946660(+) (exbB) [Pseudomonas chlororaphis strain X8]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATTCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACTACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTCGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867