Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KS461_RS08815 Genome accession   NZ_CP077678
Coordinates   1943691..1945922 (+) Length   743 a.a.
NCBI ID   WP_258256909.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain X8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1938691..1950922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KS461_RS08790 (KS461_08780) - 1939812..1940471 (+) 660 WP_038580923.1 transglutaminase family protein -
  KS461_RS08795 (KS461_08785) - 1940514..1941137 (+) 624 WP_124307981.1 glutathione S-transferase family protein -
  KS461_RS08800 (KS461_08790) - 1941270..1942202 (+) 933 WP_038580920.1 ABC transporter ATP-binding protein -
  KS461_RS08805 (KS461_08795) - 1942199..1942978 (+) 780 WP_007931651.1 ABC transporter permease -
  KS461_RS08810 (KS461_08800) - 1943027..1943542 (-) 516 WP_096373426.1 DUF2062 domain-containing protein -
  KS461_RS08815 (KS461_08805) comA 1943691..1945922 (+) 2232 WP_258256909.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KS461_RS08820 (KS461_08810) exbB 1946025..1946660 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KS461_RS08825 (KS461_08815) - 1946657..1947085 (+) 429 WP_009047818.1 biopolymer transporter ExbD -
  KS461_RS08830 (KS461_08820) lpxK 1947085..1948095 (+) 1011 WP_258256910.1 tetraacyldisaccharide 4'-kinase -
  KS461_RS08835 (KS461_08825) - 1948119..1948304 (+) 186 WP_007931663.1 Trm112 family protein -
  KS461_RS08840 (KS461_08830) kdsB 1948301..1949065 (+) 765 WP_016702178.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KS461_RS08845 (KS461_08835) - 1949065..1949529 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  KS461_RS08850 (KS461_08840) murB 1949526..1950545 (+) 1020 WP_258256912.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81324.48 Da        Isoelectric Point: 9.9468

>NTDB_id=582141 KS461_RS08815 WP_258256909.1 1943691..1945922(+) (comA) [Pseudomonas chlororaphis strain X8]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYALALFLLGLTWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPLHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLVAAEGGWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYVL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNTVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGVERLDLMLLSHADADHAGGA
DAVQRGLPVARLVSGDPEGLPAYLPAEPCVSGEQWQWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=582141 KS461_RS08815 WP_258256909.1 1943691..1945922(+) (comA) [Pseudomonas chlororaphis strain X8]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTGTTGCCGGTAGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATGCATTGGCACTTTTTCTGTTGGGCCTGACGT
GGGCTTGCGTCAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGATGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGATTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCTCGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGCTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGTCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGTATTGGCGCCACGGGC
ACGGTCAAGGATGGACAACTGCTGGTTGCCGCTGAGGGTGGCTGGCGTGCGCGTATTCGCCAGCGCTTGCTGCAGGTCGA
TGCCCATGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGTCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCATTCGCTTC
GGCCCTGGGTTATGGGTTGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGTGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCATTTCTGCTGGCGTTGAATACGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTATCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGTCTGGGAGG
TTGGCGCTGGTGGCAATCCTGGACCCGTATCCAATGGTTGATCGCCATCGGCCTGTGCCCAGTGCTGCTGGCGTTGGGAT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTCCTGGCGGTGCCCTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGCGGTTTGCTGGACTTGCTGTT
CCGCGGTCTGACGCTATTGGCTGCCCAATGGCCGGCATGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGAGCCTTTCTGCTGTTGCTGCCCGCTGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTTCCGCCGAAAAACACTCTGCCATACGGCGAGGCGGAAGTTTGGCAACTGGATGTCGGGCAGGGGCTGGCGGTACTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGCCCGCGTTTGGGCGACTCCGACCTGGGCGCGCGGGTGGTACTGC
CATCCTTGCGCAAGCTGGGCGTCGAGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCTGTCCAGCGCGGCTTACCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGTCAGCGGCGAGCAATGGCAATGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGTTGCTGACGGGGGATATCGATGCCCTGGCGGAA
CGCGCGTTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCACACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTGGCGCCTTCGGCAGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAAGGAGCGCTACGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.117

96.77

0.62