Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KTT68_RS16650 Genome accession   NZ_CP077672
Coordinates   3396514..3397203 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SWUJ1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3391514..3402203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTT68_RS16615 - 3391711..3392193 (-) 483 WP_224223854.1 flagellar protein FlgN -
  KTT68_RS16620 flgM 3392208..3392474 (-) 267 WP_224223855.1 flagellar biosynthesis anti-sigma factor FlgM -
  KTT68_RS16625 - 3392544..3392963 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  KTT68_RS16630 comFC 3393037..3393726 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  KTT68_RS16635 - 3393732..3394016 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  KTT68_RS16640 comFA 3394074..3395459 (-) 1386 WP_224223856.1 DEAD/DEAH box helicase Machinery gene
  KTT68_RS16645 - 3395568..3396416 (-) 849 WP_045209019.1 DegV family protein -
  KTT68_RS16650 degU 3396514..3397203 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KTT68_RS16655 degS 3397280..3398443 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  KTT68_RS16660 - 3398666..3399313 (+) 648 WP_007614107.1 YigZ family protein -
  KTT68_RS16665 - 3399318..3400538 (+) 1221 WP_105937243.1 LCP family protein -
  KTT68_RS16670 - 3400637..3401713 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=582103 KTT68_RS16650 WP_003219701.1 3396514..3397203(-) (degU) [Bacillus velezensis strain SWUJ1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=582103 KTT68_RS16650 WP_003219701.1 3396514..3397203(-) (degU) [Bacillus velezensis strain SWUJ1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGCAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1