Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KTT68_RS16640 Genome accession   NZ_CP077672
Coordinates   3394074..3395459 (-) Length   461 a.a.
NCBI ID   WP_224223856.1    Uniprot ID   -
Organism   Bacillus velezensis strain SWUJ1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3389074..3400459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTT68_RS16605 flgL 3389249..3390166 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  KTT68_RS16610 flgK 3390178..3391695 (-) 1518 WP_044801917.1 flagellar hook-associated protein FlgK -
  KTT68_RS16615 - 3391711..3392193 (-) 483 WP_224223854.1 flagellar protein FlgN -
  KTT68_RS16620 flgM 3392208..3392474 (-) 267 WP_224223855.1 flagellar biosynthesis anti-sigma factor FlgM -
  KTT68_RS16625 - 3392544..3392963 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  KTT68_RS16630 comFC 3393037..3393726 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  KTT68_RS16635 - 3393732..3394016 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  KTT68_RS16640 comFA 3394074..3395459 (-) 1386 WP_224223856.1 DEAD/DEAH box helicase Machinery gene
  KTT68_RS16645 - 3395568..3396416 (-) 849 WP_045209019.1 DegV family protein -
  KTT68_RS16650 degU 3396514..3397203 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KTT68_RS16655 degS 3397280..3398443 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  KTT68_RS16660 - 3398666..3399313 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52314.66 Da        Isoelectric Point: 10.1065

>NTDB_id=582102 KTT68_RS16640 WP_224223856.1 3394074..3395459(-) (comFA) [Bacillus velezensis strain SWUJ1]
MSEGASEFSEVRSFFYGRHLLRSEIPFSDQRINVFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFGAPSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRQPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=582102 KTT68_RS16640 WP_224223856.1 3394074..3395459(-) (comFA) [Bacillus velezensis strain SWUJ1]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGAGTTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACGTTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTGGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTTTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGTTATCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGCAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCACAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATAAGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCAGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATTGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(325-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625