Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   MUK78_RS08710 Genome accession   NZ_CP095088
Coordinates   1831912..1832388 (-) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli isolate w264     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1826912..1837388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUK78_RS08670 (MUK78_08670) tmaR 1828051..1828380 (+) 330 WP_000450409.1 DUF496 family protein -
  MUK78_RS08675 (MUK78_08675) - 1828481..1828846 (-) 366 WP_001280454.1 EutP/PduV family microcompartment system protein -
  MUK78_RS08680 (MUK78_08680) - 1829117..1829488 (-) 372 WP_213091266.1 transposase -
  MUK78_RS08685 (MUK78_08685) - 1830304..1830384 (-) 81 Protein_1702 hypothetical protein -
  MUK78_RS08690 (MUK78_08690) - 1830484..1830633 (-) 150 Protein_1703 DUF5983 family protein -
  MUK78_RS08695 (MUK78_08695) - 1830630..1831007 (-) 378 WP_001556084.1 TA system toxin CbtA family protein -
  MUK78_RS08700 (MUK78_08700) - 1831097..1831465 (-) 369 WP_016230789.1 type IV toxin-antitoxin system YeeU family antitoxin -
  MUK78_RS08705 (MUK78_08705) yeeT 1831628..1831849 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  MUK78_RS08710 (MUK78_08710) radC 1831912..1832388 (-) 477 WP_001186775.1 RadC family protein Machinery gene
  MUK78_RS08715 (MUK78_08715) - 1832404..1832877 (-) 474 WP_001765426.1 antirestriction protein -
  MUK78_RS08720 (MUK78_08720) - 1833219..1834037 (-) 819 WP_020239663.1 DUF932 domain-containing protein -
  MUK78_RS08725 (MUK78_08725) - 1834155..1834350 (-) 196 Protein_1710 DUF905 family protein -
  MUK78_RS08730 (MUK78_08730) - 1834421..1837267 (-) 2847 WP_096037818.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=582097 MUK78_RS08710 WP_001186775.1 1831912..1832388(-) (radC) [Escherichia coli isolate w264]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=582097 MUK78_RS08710 WP_001186775.1 1831912..1832388(-) (radC) [Escherichia coli isolate w264]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399