Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KTT68_RS01785 Genome accession   NZ_CP077672
Coordinates   332881..333318 (-) Length   145 a.a.
NCBI ID   WP_038456921.1    Uniprot ID   -
Organism   Bacillus velezensis strain SWUJ1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 327881..338318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTT68_RS01760 - 329061..330263 (+) 1203 WP_224224023.1 GTP-binding protein -
  KTT68_RS01765 - 330328..331464 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  KTT68_RS01770 - 331479..331913 (+) 435 WP_224224024.1 RDD family protein -
  KTT68_RS01775 - 332030..332308 (+) 279 WP_263612330.1 YckD family protein -
  KTT68_RS01780 nin/comJ 332462..332860 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  KTT68_RS01785 nucA/comI 332881..333318 (-) 438 WP_038456921.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KTT68_RS01790 hxlB 333676..334233 (-) 558 WP_038456922.1 6-phospho-3-hexuloisomerase -
  KTT68_RS01795 hxlA 334230..334865 (-) 636 WP_221664223.1 3-hexulose-6-phosphate synthase -
  KTT68_RS01800 - 335097..335459 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16099.38 Da        Isoelectric Point: 8.4850

>NTDB_id=582046 KTT68_RS01785 WP_038456921.1 332881..333318(-) (nucA/comI) [Bacillus velezensis strain SWUJ1]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKNDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=582046 KTT68_RS01785 WP_038456921.1 332881..333318(-) (nucA/comI) [Bacillus velezensis strain SWUJ1]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAATGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGTCGT
GAGCAATCTCTTAAACATGTACCTGTAAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641