Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   KTN75_RS08165 Genome accession   NZ_CP077635
Coordinates   1579268..1579579 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain R19.1007     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1574268..1584579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTN75_RS08145 (KTN75_08145) ctsE 1575137..1576696 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  KTN75_RS08150 (KTN75_08150) ctsX 1576686..1577273 (-) 588 WP_002934760.1 hypothetical protein Machinery gene
  KTN75_RS08155 (KTN75_08155) ctsP 1577277..1577885 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  KTN75_RS08160 (KTN75_08160) ctsD 1577878..1579290 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  KTN75_RS08165 (KTN75_08165) ctsR 1579268..1579579 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  KTN75_RS08170 (KTN75_08170) nifJ 1579603..1583163 (-) 3561 WP_002934762.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  KTN75_RS08175 (KTN75_08175) - 1583256..1583897 (-) 642 WP_002934763.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=581788 KTN75_RS08165 WP_002855438.1 1579268..1579579(-) (ctsR) [Campylobacter jejuni strain R19.1007]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=581788 KTN75_RS08165 WP_002855438.1 1579268..1579579(-) (ctsR) [Campylobacter jejuni strain R19.1007]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1