Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   KTN74_RS07180 Genome accession   NZ_CP077633
Coordinates   1408334..1408645 (-) Length   103 a.a.
NCBI ID   WP_015016496.1    Uniprot ID   A0A3X8SVA4
Organism   Campylobacter jejuni strain R16.2162     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1403334..1413645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTN74_RS07160 (KTN74_07160) ctsE 1404203..1405762 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  KTN74_RS07165 (KTN74_07165) ctsX 1405752..1406339 (-) 588 WP_002851370.1 membrane protein Machinery gene
  KTN74_RS07170 (KTN74_07170) ctsP 1406343..1406951 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  KTN74_RS07175 (KTN74_07175) ctsD 1406944..1408356 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  KTN74_RS07180 (KTN74_07180) ctsR 1408334..1408645 (-) 312 WP_015016496.1 hypothetical protein Machinery gene
  KTN74_RS07185 (KTN74_07185) nifJ 1408669..1412229 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  KTN74_RS07190 (KTN74_07190) - 1412322..1412963 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12457.35 Da        Isoelectric Point: 5.8722

>NTDB_id=581759 KTN74_RS07180 WP_015016496.1 1408334..1408645(-) (ctsR) [Campylobacter jejuni strain R16.2162]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=581759 KTN74_RS07180 WP_015016496.1 1408334..1408645(-) (ctsR) [Campylobacter jejuni strain R16.2162]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X8SVA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99