Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   MUK52_RS13370 Genome accession   NZ_CP095011
Coordinates   3109299..3110711 (+) Length   470 a.a.
NCBI ID   WP_114053588.1    Uniprot ID   A0A344TUQ3
Organism   Streptomyces sp. 2P-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3104299..3115711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUK52_RS13345 - 3104357..3105175 (-) 819 WP_114058395.1 sugar phosphate isomerase/epimerase -
  MUK52_RS13350 - 3105247..3106176 (-) 930 WP_114053592.1 Ppx/GppA phosphatase family protein -
  MUK52_RS13355 - 3106241..3107095 (+) 855 WP_284576422.1 hypothetical protein -
  MUK52_RS13360 - 3107147..3107359 (-) 213 WP_284576425.1 antitoxin -
  MUK52_RS13365 - 3107448..3109160 (-) 1713 WP_284576428.1 hypothetical protein -
  MUK52_RS13370 radA/sms 3109299..3110711 (+) 1413 WP_114053588.1 DNA repair protein RadA Machinery gene
  MUK52_RS13375 disA 3110861..3111985 (+) 1125 WP_114053587.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  MUK52_RS13380 - 3112040..3112834 (-) 795 WP_350206362.1 hypothetical protein -
  MUK52_RS13385 - 3113004..3113618 (+) 615 WP_114053585.1 phosphatase PAP2 family protein -
  MUK52_RS13390 - 3113641..3114594 (+) 954 WP_284576435.1 A/G-specific adenine glycosylase -
  MUK52_RS13395 - 3114766..3115338 (+) 573 WP_114053583.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49266.39 Da        Isoelectric Point: 8.2605

>NTDB_id=581752 MUK52_RS13370 WP_114053588.1 3109299..3110711(+) (radA/sms) [Streptomyces sp. 2P-4]
MAARTSRSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEMGAAAVRTTAPGRVSTAALPIAQVDGRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKASGPSHRTLYLTGEESASQVRLRADRIGALSDHLYLAAETDLSA
VLGHIEAVNPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVL
GFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVTEVADMGDALRVLPRRRSRETARETARE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=581752 MUK52_RS13370 WP_114053588.1 3109299..3110711(+) (radA/sms) [Streptomyces sp. 2P-4]
ATGGCTGCCCGTACATCCCGCTCGTCCGCCAAGGACCGGCCCTCCTACCGCTGCACCGAGTGCGGCTGGACCACCGCCAA
ATGGCTCGGGCGCTGCCCCGAGTGCCAGGCGTGGGGCACCGTCGAGGAGATGGGGGCGGCCGCCGTGCGGACCACCGCGC
CCGGCCGCGTCTCGACCGCCGCGCTGCCGATCGCGCAGGTCGACGGCAGGACGGCGACCGCCCGCAGCACGGGCGTCGAC
GAGCTGGACCGGGTGCTCGGCGGCGGCCTCGTCCCCGGCGCCGTCGTCCTGCTCGCCGGCGAGCCGGGCGTCGGCAAGTC
GACGCTGCTGCTGGACGTGGCGGCCAAGGCCTCCGGCCCCTCCCACCGCACCCTCTACCTCACCGGGGAGGAGTCCGCGA
GCCAGGTGCGGCTGCGGGCCGACCGCATCGGCGCGCTCAGCGACCACCTCTACCTCGCCGCCGAGACCGACCTGTCGGCC
GTCCTCGGCCACATCGAGGCCGTGAACCCCTCGCTGCTGGTCCTGGACTCCGTCCAGACCGTCGCCTCCCCCGAGATCGA
CGGCGCGCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGGGCGTCCAAGGAGCGCGGCATGTCGA
CGCTGCTCGTCGGCCACGTCACGAAGGACGGCGCCATCGCCGGCCCGCGGCTGCTGGAGCACCTGGTGGACGTCGTCCTC
GGGTTCGAGGGCGACCGGCACGCCCGGCTGCGCCTGGTGCGCGGCGTGAAGAACCGGTACGGCGCCACCGACGAGGTGGG
CTGCTTCGAACTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCAGCGGGCTGTTCCTGACCCGCCGCGCGGAGGCCG
TCCCCGGCACCTGCCTGACCGTCACCCTGGAGGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTCGACTCG
CAGATCCCCTCCCCGCGGCGGACCACCTCCGGGCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTGCTGGAGCAGCG
CGGCCGGATCACCGCGCTCGGCAAGCGGGACATCTACAGCGCCACCGTGGGCGGGGTGAAGCTGACCGAGCCGGCCGCCG
ACCTGGCCGTCGCCCTGGCGCTCGCCTCGGCCGCGAGCGACGTCCCGCTGCCGAAGAACCTGGTCGCCATCGGGGAGGTC
GGCCTGGCCGGCGAGGTCCGCCGGGTCACCGGCGTGCAGAGGCGCCTCGCCGAGGCCCACCGGCTCGGGTTCACGCACGC
GCTGGTGCCCGCCGACCCGGGGAAGGTGCCCGCCGGCATGAAGGTCACGGAGGTCGCGGACATGGGCGATGCGCTGCGCG
TTCTGCCCCGCCGGCGCTCCCGCGAGACGGCCCGCGAGACGGCCCGCGAATAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A344TUQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.812

96.383

0.432
  radA Streptococcus pneumoniae Rx1

44.626

91.064

0.406
  radA Streptococcus pneumoniae D39

44.626

91.064

0.406
  radA Streptococcus pneumoniae R6

44.626

91.064

0.406
  radA Streptococcus pneumoniae TIGR4

44.626

91.064

0.406
  radA Streptococcus mitis SK321

44.626

91.064

0.406
  radA Streptococcus mitis NCTC 12261

44.626

91.064

0.406