Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KTN74_RS03095 Genome accession   NZ_CP077633
Coordinates   587230..588003 (+) Length   257 a.a.
NCBI ID   WP_002868431.1    Uniprot ID   A0AAW5E9C5
Organism   Campylobacter jejuni strain R16.2162     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 582230..593003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTN74_RS03080 (KTN74_03080) - 583079..585013 (-) 1935 WP_057097296.1 ribonuclease R family protein -
  KTN74_RS03085 (KTN74_03085) ilvC 585132..586154 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  KTN74_RS03090 (KTN74_03090) - 586158..587240 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  KTN74_RS03095 (KTN74_03095) dprA 587230..588003 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  KTN74_RS03100 (KTN74_03100) ruvX 588000..588383 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  KTN74_RS03105 (KTN74_03105) - 588412..589251 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  KTN74_RS03110 (KTN74_03110) msrA 589427..589924 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  KTN74_RS03115 (KTN74_03115) ppa 589966..590484 (-) 519 WP_002852138.1 inorganic diphosphatase -
  KTN74_RS03120 (KTN74_03120) adk 590494..591072 (-) 579 WP_032590860.1 adenylate kinase -
  KTN74_RS03125 (KTN74_03125) aspS 591069..592820 (-) 1752 WP_057097294.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.66 Da        Isoelectric Point: 7.0853

>NTDB_id=581740 KTN74_RS03095 WP_002868431.1 587230..588003(+) (dprA) [Campylobacter jejuni strain R16.2162]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=581740 KTN74_RS03095 WP_002868431.1 587230..588003(+) (dprA) [Campylobacter jejuni strain R16.2162]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459