Detailed information NTG0581682

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: MT986_RS05175
• Genome accession: NZ_CP094998
• Coordinates: 1099215..1100369 (-)
• Length: 384 a.a.
• NCBI ID: WP_010872202.1
• Uniprot ID: -
• Organism: Synechocystis sp. PCC 6803 substr. GT-T
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1094215..1105369

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MT986_RS05145 (MT986_05145)	ribH	1094650..1095144 (-)	495	WP_010872197.1	6,7-dimethyl-8-ribityllumazine synthase	-
MT986_RS05150 (MT986_05150)	psbZ	1095249..1095437 (-)	189	WP_014407093.1	photosystem II reaction center protein PsbZ	-
MT986_RS05160 (MT986_05160)	-	1095773..1096684 (-)	912	WP_010872199.1	M48 family metallopeptidase	-
MT986_RS16640	-	1096859..1096990 (+)	132	WP_255345285.1	hypothetical protein	-
MT986_RS05165 (MT986_05165)	-	1097078..1098064 (+)	987	WP_010872200.1	S1 RNA-binding domain-containing protein	-
MT986_RS05170 (MT986_05170)	-	1098324..1099172 (+)	849	WP_010872201.1	IS630-like element ISTcSa family transposase	-
MT986_RS05175 (MT986_05175)	recF	1099215..1100369 (-)	1155	WP_010872202.1	DNA replication/repair protein RecF	Machinery gene
MT986_RS05180 (MT986_05180)	-	1100411..1102015 (-)	1605	WP_010872203.1	ABC transporter ATP-binding protein	-
MT986_RS05185 (MT986_05185)	pyk	1102284..1104059 (-)	1776	WP_010872204.1	pyruvate kinase	-
MT986_RS05190 (MT986_05190)	-	1104247..1104648 (+)	402	WP_010872205.1	DUF1824 family protein	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 43743.84 Da
• Isoelectric Point: 6.3184

>NTDB_id=581682 MT986_RS05175 WP_010872202.1 1099215..1100369(-) (recF) [Synechocystis sp. PCC 6803 substr. GT-T]
MYLKKLYLRAFRNYLEEEVEFSAQKTILVGNNAQGKSNLLEAVELLATLKSHRTSRDQELVLDGAANGQIKALLERQYSV
AELEIDLRRSGRRNLRINQNQCRRQLDFLGCLNAVEFSCLDLDLVRGAPDCRRQWLDTLLTQLEPLYAHLLGQYQHIVKQ
RNALLKSLRQQWETGLALGEESTASLSLWDQQLVEMGTRVVRRRARGLARLAPLAQEWHGRISGGNETLTVTYQPNVTWV
GDDPEVVHQAFLEKLAQRRSAELHLGTTVVGPHRDEVGFVLDDTPARTYGSQGQQRTLVLALKLAELSLIETVIGEPPLL
LLDDVLAELDLDRQGQLLMAIEDRFQTLITTTHLSRFDDRWRRSAQILKVNAGQLEERWPSEID

Nucleotide

• Length: 1155 bp

>NTDB_id=581682 MT986_RS05175 WP_010872202.1 1099215..1100369(-) (recF) [Synechocystis sp. PCC 6803 substr. GT-T]
ATGTACCTGAAAAAACTCTATTTACGGGCCTTTCGCAATTACCTCGAAGAAGAGGTGGAATTTTCTGCTCAAAAAACCAT
TTTGGTGGGCAATAATGCCCAGGGGAAATCTAACTTATTGGAAGCGGTGGAACTGTTGGCAACGCTCAAAAGCCATCGCA
CTAGTCGGGATCAGGAATTGGTGCTAGACGGGGCGGCCAATGGGCAAATTAAAGCCCTACTGGAAAGGCAATACAGTGTG
GCGGAGTTAGAAATTGACCTACGGCGATCGGGGCGGCGCAACCTACGCATTAACCAAAATCAATGTCGTCGTCAGTTGGA
TTTTTTAGGCTGTTTAAATGCGGTGGAATTTTCCTGTTTAGATTTGGATTTAGTCCGGGGAGCGCCCGATTGTCGCCGTC
AATGGCTAGATACTTTGTTAACCCAGCTAGAACCCCTCTATGCCCATCTGTTGGGGCAGTACCAGCACATTGTTAAGCAA
AGAAATGCTCTACTAAAAAGCCTACGACAACAATGGGAAACGGGACTAGCTTTGGGGGAAGAGTCGACAGCTTCTTTGTC
TCTCTGGGACCAGCAGTTGGTGGAAATGGGCACTAGGGTAGTCCGCCGTCGGGCGAGGGGTTTAGCCCGTCTTGCTCCTT
TGGCCCAGGAATGGCATGGGCGCATTAGCGGTGGCAATGAAACCCTGACCGTTACCTATCAACCCAATGTCACCTGGGTG
GGGGATGATCCGGAAGTGGTGCACCAGGCTTTTTTAGAAAAATTAGCCCAACGGCGATCGGCAGAATTACATCTGGGGAC
AACGGTGGTGGGGCCCCATCGGGACGAAGTGGGGTTTGTCCTCGACGACACTCCCGCTAGAACCTATGGCTCCCAGGGAC
AGCAAAGAACTCTAGTCCTAGCATTAAAATTGGCGGAATTGAGCTTGATTGAAACGGTTATTGGAGAACCACCACTGTTG
TTATTGGACGATGTCTTGGCGGAATTAGACCTCGATCGCCAGGGACAATTGTTAATGGCCATTGAGGATCGTTTTCAAAC
CCTGATCACCACCACCCATTTAAGTCGTTTTGATGACCGCTGGCGGCGATCGGCCCAGATTCTCAAAGTTAATGCTGGTC
AACTAGAGGAACGGTGGCCGTCCGAAATTGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	38.727	98.177	0.38
recF	Streptococcus pneumoniae R6	39.266	92.188	0.362