Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KSP27_RS07975 Genome accession   NZ_CP077603
Coordinates   1604748..1605212 (-) Length   154 a.a.
NCBI ID   WP_011798959.1    Uniprot ID   -
Organism   Neisseria meningitidis strain S4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1599748..1610212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSP27_RS07925 - 1599766..1600011 (-) 246 WP_002224299.1 hypothetical protein -
  KSP27_RS07930 - 1600123..1600551 (+) 429 WP_002212270.1 CopD family protein -
  KSP27_RS07935 - 1600563..1601039 (+) 477 WP_002224298.1 CYTH domain-containing protein -
  KSP27_RS07940 - 1601389..1601877 (-) 489 WP_002224297.1 dihydrofolate reductase -
  KSP27_RS07945 aroG 1601945..1603000 (-) 1056 WP_002216371.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  KSP27_RS07950 - 1603162..1603389 (-) 228 WP_153310284.1 hypothetical protein -
  KSP27_RS07960 - 1603663..1603920 (+) 258 WP_002247771.1 hypothetical protein -
  KSP27_RS07965 - 1603969..1604073 (-) 105 Protein_1563 IS1595 family transposase -
  KSP27_RS11320 - 1604245..1604379 (-) 135 WP_256864600.1 hypothetical protein -
  KSP27_RS07975 comE 1604748..1605212 (-) 465 WP_011798959.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16563.76 Da        Isoelectric Point: 10.8773

>NTDB_id=581589 KSP27_RS07975 WP_011798959.1 1604748..1605212(-) (comE) [Neisseria meningitidis strain S4]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=581589 KSP27_RS07975 WP_011798959.1 1604748..1605212(-) (comE) [Neisseria meningitidis strain S4]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74