Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   KSP27_RS02615 Genome accession   NZ_CP077603
Coordinates   518221..518820 (+) Length   199 a.a.
NCBI ID   WP_002220676.1    Uniprot ID   A0AB36RRQ2
Organism   Neisseria meningitidis strain S4     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 513221..523820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSP27_RS02590 - 513533..514120 (-) 588 WP_002220670.1 superoxide dismutase -
  KSP27_RS02595 dnaB 514283..515689 (+) 1407 WP_002220671.1 replicative DNA helicase -
  KSP27_RS02600 pilH 515998..516672 (+) 675 WP_002247806.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KSP27_RS02605 pilV 516696..517307 (+) 612 WP_002247807.1 type IV pilus modification protein PilV Machinery gene
  KSP27_RS02610 pilJ 517304..518242 (+) 939 WP_002220674.1 PilW family protein Machinery gene
  KSP27_RS02615 pilK 518221..518820 (+) 600 WP_002220676.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KSP27_RS02620 pilX 518825..519298 (+) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  KSP27_RS02625 - 521049..521474 (-) 426 Protein_511 AzlC family ABC transporter permease -
  KSP27_RS02630 dut 521617..522069 (+) 453 WP_002220679.1 dUTP diphosphatase -
  KSP27_RS02635 dapC 522145..523332 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21932.93 Da        Isoelectric Point: 7.5812

>NTDB_id=581572 KSP27_RS02615 WP_002220676.1 518221..518820(+) (pilK) [Neisseria meningitidis strain S4]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCEKGLCTAVNMRTNTNNGNEEAFDNIVVQGKPTVEAVKRSCPAKSTGLCIDNKGMEYKKGTRSVSKMPRYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=581572 KSP27_RS02615 WP_002220676.1 518221..518820(+) (pilK) [Neisseria meningitidis strain S4]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATATGCGGACAAATACAAATAATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAAT
CTACAGGCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAAATGCCACGTTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.67

100

0.905