Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KSP27_RS02600 Genome accession   NZ_CP077603
Coordinates   515998..516672 (+) Length   224 a.a.
NCBI ID   WP_002247806.1    Uniprot ID   A0AAD2J764
Organism   Neisseria meningitidis strain S4     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 510998..521672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSP27_RS02580 - 511863..512195 (+) 333 WP_002213854.1 hypothetical protein -
  KSP27_RS02585 - 512526..513035 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  KSP27_RS02590 - 513533..514120 (-) 588 WP_002220670.1 superoxide dismutase -
  KSP27_RS02595 dnaB 514283..515689 (+) 1407 WP_002220671.1 replicative DNA helicase -
  KSP27_RS02600 pilH 515998..516672 (+) 675 WP_002247806.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KSP27_RS02605 pilV 516696..517307 (+) 612 WP_002247807.1 type IV pilus modification protein PilV Machinery gene
  KSP27_RS02610 pilJ 517304..518242 (+) 939 WP_002220674.1 PilW family protein Machinery gene
  KSP27_RS02615 pilK 518221..518820 (+) 600 WP_002220676.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KSP27_RS02620 pilX 518825..519298 (+) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  KSP27_RS02625 - 521049..521474 (-) 426 Protein_511 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25135.80 Da        Isoelectric Point: 10.0449

>NTDB_id=581569 KSP27_RS02600 WP_002247806.1 515998..516672(+) (pilH) [Neisseria meningitidis strain S4]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGRGMLAFGDKNGNKAYDGDAADVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTKD
QHLTSKSSFFYSDGYIQIVLTDARAVLDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=581569 KSP27_RS02600 WP_002247806.1 515998..516672(+) (pilH) [Neisseria meningitidis strain S4]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGCGGCGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAAGAC
CAGCATCTTACAAGCAAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTT
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTGATC
GGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

89.767

95.982

0.862