Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MUO46_RS09490 Genome accession   NZ_CP094927
Coordinates   1854688..1855800 (+) Length   370 a.a.
NCBI ID   WP_024273557.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1849688..1860800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUO46_RS09465 (MUO46_09435) rnpA 1849951..1850304 (-) 354 WP_001789343.1 ribonuclease P protein component -
  MUO46_RS09470 (MUO46_09440) rpmH 1850425..1850562 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  MUO46_RS09475 (MUO46_09445) dnaA 1851293..1852654 (+) 1362 WP_277445820.1 chromosomal replication initiator protein DnaA -
  MUO46_RS09480 (MUO46_09450) dnaN 1852932..1854065 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  MUO46_RS09485 (MUO46_09455) yaaA 1854446..1854691 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  MUO46_RS09490 (MUO46_09460) recF 1854688..1855800 (+) 1113 WP_024273557.1 DNA replication/repair protein RecF Machinery gene
  MUO46_RS09495 (MUO46_09465) gyrB 1855810..1857744 (+) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MUO46_RS09500 (MUO46_09470) gyrA 1857781..1860444 (+) 2664 WP_000819084.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42371.42 Da        Isoelectric Point: 6.5805

>NTDB_id=581452 MUO46_RS09490 WP_024273557.1 1854688..1855800(+) (recF) [Staphylococcus aureus strain 13]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIAHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=581452 MUO46_RS09490 WP_024273557.1 1854688..1855800(+) (recF) [Staphylococcus aureus strain 13]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGCTCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.33

100

0.497