Detailed information NTG0581443

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KSL88_RS06790
• Genome accession: NZ_CP077421
• Coordinates: 1532128..1532973 (+)
• Length: 281 a.a.
• NCBI ID: WP_224073422.1
• Uniprot ID: -
• Organism: Pectobacterium polaris strain QK413-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1527128..1537973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KSL88_RS06760 (KSL88_06730)	gspI	1527520..1527885 (+)	366	WP_109411441.1	type II secretion system minor pseudopilin GspI	-
KSL88_RS06765 (KSL88_06735)	gspJ	1527885..1528535 (+)	651	WP_224073418.1	type II secretion system minor pseudopilin GspJ	-
KSL88_RS06770 (KSL88_06740)	gspK	1528532..1529518 (+)	987	WP_109411439.1	type II secretion system minor pseudopilin GspK	-
KSL88_RS06775 (KSL88_06745)	gspL	1529515..1530792 (+)	1278	WP_224073419.1	type II secretion system protein GspL	-
KSL88_RS06780 (KSL88_06750)	gspM	1530789..1531283 (+)	495	WP_224073420.1	type II secretion system protein GspM	-
KSL88_RS06785 (KSL88_06755)	-	1531273..1532019 (+)	747	WP_224073421.1	type II secretion system protein N	-
KSL88_RS06790 (KSL88_06760)	pilD	1532128..1532973 (+)	846	WP_224073422.1	A24 family peptidase	Machinery gene
KSL88_RS06795 (KSL88_06765)	ypdK	1533119..1533193 (-)	75	WP_099606229.1	membrane protein YpdK	-
KSL88_RS06800 (KSL88_06770)	-	1533551..1534576 (-)	1026	WP_224073423.1	LLM class flavin-dependent oxidoreductase	-
KSL88_RS06805 (KSL88_06775)	-	1534928..1535992 (+)	1065	WP_174865158.1	ABC transporter substrate-binding protein	-
KSL88_RS06810 (KSL88_06780)	-	1535989..1537026 (+)	1038	WP_224073424.1	iron ABC transporter permease	-
KSL88_RS06815 (KSL88_06785)	-	1537028..1537798 (+)	771	WP_224073425.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31408.37 Da
• Isoelectric Point: 5.7643

>NTDB_id=581443 KSL88_RS06790 WP_224073422.1 1532128..1532973(+) (pilD) [Pectobacterium polaris strain QK413-1]
MDDLREFAQLFPAWWFGSLGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELEAGMVDSDPDTRYNLCWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLTAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSETFVPLNDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLVWRGLRKEDTAKPLAFGPWLAMGGVFSVIMNGFNL

Nucleotide

• Length: 846 bp

>NTDB_id=581443 KSL88_RS06790 WP_224073422.1 1532128..1532973(+) (pilD) [Pectobacterium polaris strain QK413-1]
GTGGACGATTTAAGGGAGTTCGCACAGCTGTTTCCGGCGTGGTGGTTTGGGTCGCTAGGCGTGTTGGGGTTGATTGTTGG
CAGTTTTCTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAGCGG
GCATGGTCGATTCCGATCCTGATACACGCTACAACCTGTGTTGGCCGCCTTCGTCTTGCCCGCACTGCCAGCAGGCTATT
GCAGTAAAAGATAATATCCCGCTATTCAGCTGGTTGTGGTTGCGAGGCCGCTCCCGCTGCTGTCATCAATCGGTGTCTGT
GCAATATCCGTTAGTGGAAGTCATCACTATGCTGGCTTTTCTGACGGCAGGTTTACTCTGGCTGCCCGGTATGGCGCTGT
GGGGGGCGTTGATTCTGCTGTCCTTCCTGCTGGTGCTGACTGTTATTGATATCAAAACGCTGCTGTTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATGGGGCTGCTGTTTAATCTATCGGAGACCTTTGTCCCATTGAATGATGCCGTCGTCGGCGC
GATGGCCGGTTATTTATCTCTGTGGCTACTTTATTGGGTATTCAAATACGCCACAGGCAAAGAGGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGTGCCTGGCTGGGTTGGCAGGCGTTGCCGAATCTGGTTCTGGTGGCGGCGCTAAGC
GGGTTGGTCGTTACTCTCGTTTGGCGCGGGTTGCGTAAAGAGGATACGGCTAAACCGCTGGCCTTTGGCCCCTGGCTGGC
AATGGGCGGCGTGTTCAGCGTGATAATGAACGGATTCAATCTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.185	96.441	0.484
pilD	Vibrio campbellii strain DS40M4	44.891	97.509	0.438
pilD	Neisseria gonorrhoeae MS11	47.126	92.883	0.438
pilD	Acinetobacter baumannii D1279779	41.758	97.153	0.406
pilD	Acinetobacter nosocomialis M2	41.392	97.153	0.402