Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   I6L88_RS06970 Genome accession   NZ_CP077404
Coordinates   1433965..1434999 (-) Length   344 a.a.
NCBI ID   WP_002267541.1    Uniprot ID   -
Organism   Streptococcus mutans strain FDAARGOS 1458     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1428965..1439999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L88_RS06935 (I6L88_06935) - 1429878..1430180 (-) 303 WP_002262601.1 YlxQ-related RNA-binding protein -
  I6L88_RS06940 (I6L88_06940) - 1430173..1430469 (-) 297 WP_002263922.1 RNase P modulator RnpM -
  I6L88_RS06945 (I6L88_06945) nusA 1430487..1431680 (-) 1194 WP_002265156.1 transcription termination factor NusA -
  I6L88_RS06950 (I6L88_06950) rimP 1431716..1432207 (-) 492 WP_002280372.1 ribosome maturation factor RimP -
  I6L88_RS06960 (I6L88_06960) trmB 1432479..1433114 (-) 636 WP_002265651.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  I6L88_RS06965 (I6L88_06965) ccrZ 1433124..1433906 (-) 783 WP_002273963.1 cell cycle regulator CcrZ -
  I6L88_RS06970 (I6L88_06970) pptB 1433965..1434999 (-) 1035 WP_002267541.1 ABC transporter permease Regulator
  I6L88_RS06975 (I6L88_06975) pptA 1435002..1435727 (-) 726 WP_002262608.1 ABC transporter ATP-binding protein Regulator
  I6L88_RS06980 (I6L88_06980) - 1435792..1436211 (+) 420 WP_002262609.1 HIT family protein -
  I6L88_RS06985 (I6L88_06985) - 1436208..1436501 (+) 294 WP_002268777.1 hypothetical protein -
  I6L88_RS06990 (I6L88_06990) brpA 1436671..1437891 (-) 1221 WP_002262611.1 biofilm formation/cell division transcriptional regulator BrpA -
  I6L88_RS06995 (I6L88_06995) tsaE 1438222..1438665 (-) 444 WP_002280371.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40598.06 Da        Isoelectric Point: 10.6270

>NTDB_id=581320 I6L88_RS06970 WP_002267541.1 1433965..1434999(-) (pptB) [Streptococcus mutans strain FDAARGOS 1458]
MKAIFTKRRFHFINQCSRYLRYVFNDHFVLVLIFLLGFLMVQYSQLLKHFPANHWPIMLVLVLVVLTLLFWGNIATYLEP
ADQQFLLVREKDIVALIQKAKRRALFFWGTWQTLLLLILAPLFLRLGLALFSFLFLLLFLLFLKGLIIEKKSRAFLKQKG
LNWDHALNQEKKRQQAILKFFSLFTNVKGISNSVKRRAYLDFGTKLLPKETHKAWTNLYLRAFLRSGDYLGLTFRLGFLS
LLSLLFIDNPLMSAGLALLFNYLLLFQLLALYKHYDYQYLTALFPISKAEKKANLKQLLRVILYFLTAVEFCFSFSWQKT
IILLLAMLCLNEVYLPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=581320 I6L88_RS06970 WP_002267541.1 1433965..1434999(-) (pptB) [Streptococcus mutans strain FDAARGOS 1458]
ATGAAGGCAATTTTTACAAAAAGACGATTCCATTTTATCAATCAATGCAGTCGATACCTTCGCTATGTTTTTAATGATCA
TTTTGTTTTAGTATTGATTTTTTTACTAGGTTTTCTTATGGTACAGTATAGCCAACTGTTAAAACATTTTCCGGCTAATC
ATTGGCCTATCATGCTTGTTTTAGTGTTAGTTGTCTTGACCTTACTATTTTGGGGAAATATAGCGACTTATTTGGAACCA
GCGGATCAGCAATTTCTTTTGGTCAGGGAAAAGGACATTGTTGCTTTAATCCAAAAAGCTAAAAGACGAGCTCTTTTCTT
TTGGGGAACTTGGCAGACACTCTTGCTTCTTATTTTGGCACCTCTTTTTTTACGTTTGGGACTGGCACTTTTTTCTTTTC
TTTTTTTGCTCCTTTTTTTGCTCTTTTTAAAAGGATTGATCATTGAAAAAAAAAGCAGAGCTTTTTTGAAGCAGAAAGGA
CTGAACTGGGATCATGCTCTTAATCAAGAGAAAAAACGGCAGCAGGCAATTTTAAAATTCTTTTCACTTTTTACCAATGT
TAAGGGAATTTCAAACAGCGTTAAGCGACGGGCTTATTTGGATTTTGGGACAAAATTATTGCCGAAGGAGACTCATAAAG
CGTGGACTAATCTTTATTTAAGAGCTTTTTTACGCAGTGGCGATTATTTAGGACTGACCTTTCGTTTAGGTTTTTTAAGT
CTTTTAAGTCTTCTTTTTATTGATAATCCTTTAATGTCAGCAGGTTTAGCGCTCCTTTTTAATTACCTCTTGCTTTTTCA
ATTGTTGGCTCTTTATAAACATTATGATTATCAATATTTAACAGCCCTTTTTCCCATTTCAAAAGCGGAGAAGAAGGCTA
ATTTGAAACAGTTATTGCGTGTTATTCTATATTTTCTAACAGCTGTTGAATTTTGTTTTAGCTTTTCATGGCAAAAGACA
ATTATTTTACTTTTGGCAATGCTTTGTCTCAATGAAGTTTATCTGCCTTACAAAATAAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

51.453

100

0.515

  pptB Streptococcus thermophilus LMD-9

50.872

100

0.509