Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   I6L25_RS17345 Genome accession   NZ_CP077398
Coordinates   3710123..3710605 (+) Length   160 a.a.
NCBI ID   WP_004711690.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain FDAARGOS 1395     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3705123..3715605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L25_RS18535 - 3705926..3706111 (+) 186 Protein_3392 hypothetical protein -
  I6L25_RS17340 (I6L25_17340) - 3707141..3710110 (+) 2970 Protein_3393 PilC/PilY family type IV pilus protein -
  I6L25_RS17345 (I6L25_17345) pilY2 3710123..3710605 (+) 483 WP_004711690.1 type IV pilin protein Machinery gene
  I6L25_RS17350 (I6L25_17350) pilE 3710602..3711027 (+) 426 WP_004711692.1 type IV pilin protein Machinery gene
  I6L25_RS17355 (I6L25_17355) rpsP 3711174..3711425 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  I6L25_RS17360 (I6L25_17360) rimM 3711445..3711993 (+) 549 WP_004711694.1 ribosome maturation factor RimM -
  I6L25_RS17365 (I6L25_17365) trmD 3712040..3712795 (+) 756 WP_002051760.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6L25_RS17370 (I6L25_17370) rplS 3713011..3713379 (+) 369 WP_002051668.1 50S ribosomal protein L19 -
  I6L25_RS17375 (I6L25_17375) - 3713431..3714372 (-) 942 WP_080631678.1 lipase family alpha/beta hydrolase -
  I6L25_RS17380 (I6L25_17380) - 3714490..3715524 (-) 1035 WP_004711704.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17468.68 Da        Isoelectric Point: 9.1549

>NTDB_id=581202 I6L25_RS17345 WP_004711690.1 3710123..3710605(+) (pilY2) [Acinetobacter nosocomialis strain FDAARGOS 1395]
MSKYYNLKFNRGFTLIELMVTLLTLAILVAIAVPSYQSYARRATASAAKSEILKLAERLEQHKSRNFTYRGFATTSVTLT
RGGYTIQITDDTTAGNLLTSSAANGQTWVIRATTTDSRNLNFIAKNSGLRCQSLTATAVDNDCGGTTTCNTCEANSESWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=581202 I6L25_RS17345 WP_004711690.1 3710123..3710605(+) (pilY2) [Acinetobacter nosocomialis strain FDAARGOS 1395]
ATGAGTAAATACTATAATTTGAAGTTCAATCGGGGTTTTACTCTGATTGAACTTATGGTCACTCTTCTTACTTTAGCTAT
TCTTGTTGCTATTGCTGTTCCTTCTTATCAAAGTTATGCCCGTAGAGCTACCGCATCTGCCGCTAAGAGTGAGATTTTAA
AATTAGCTGAGCGATTGGAGCAGCATAAGTCTAGAAATTTTACTTATAGGGGATTTGCCACAACCTCTGTAACGTTAACT
CGTGGGGGGTATACGATTCAGATCACTGATGATACGACTGCTGGTAATTTATTAACGAGTTCTGCTGCGAATGGGCAGAC
ATGGGTGATTAGAGCGACTACTACAGATTCCAGAAATCTTAATTTTATTGCTAAAAACTCAGGTTTACGTTGCCAGAGCT
TAACAGCTACTGCTGTTGATAATGATTGTGGTGGAACAACTACATGTAACACATGTGAAGCAAATAGTGAGAGTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

83.125

100

0.831
  comE Acinetobacter baylyi ADP1

37.209

100

0.4