Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   I6L25_RS14525 Genome accession   NZ_CP077398
Coordinates   3104900..3106321 (+) Length   473 a.a.
NCBI ID   WP_004710949.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain FDAARGOS 1395     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3099900..3111321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L25_RS14505 (I6L25_14505) thrC 3100157..3101296 (+) 1140 WP_002048893.1 threonine synthase -
  I6L25_RS14510 (I6L25_14510) pbpG 3101404..3102450 (-) 1047 WP_004710943.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I6L25_RS14515 (I6L25_14515) - 3102662..3103297 (+) 636 WP_000633799.1 response regulator -
  I6L25_RS14520 (I6L25_14520) pilS 3103308..3104876 (+) 1569 WP_004710946.1 sensor histidine kinase Regulator
  I6L25_RS14525 (I6L25_14525) pilR 3104900..3106321 (+) 1422 WP_004710949.1 sigma-54-dependent transcriptional regulator Regulator
  I6L25_RS14530 (I6L25_14530) - 3106325..3107509 (-) 1185 WP_004710951.1 S41 family peptidase -
  I6L25_RS14535 (I6L25_14535) gpmI 3107525..3109072 (-) 1548 WP_004710953.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I6L25_RS14540 (I6L25_14540) lptG 3109198..3110268 (-) 1071 WP_002048976.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53155.37 Da        Isoelectric Point: 6.6690

>NTDB_id=581185 I6L25_RS14525 WP_004710949.1 3104900..3106321(+) (pilR) [Acinetobacter nosocomialis strain FDAARGOS 1395]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKIEHDFAESALENKLLIGRSQPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPLKQLTEAAETYLLQQHFPGNVRELRNMIERAITLSDDANIDVPHLHPAPLRANISNSIATVSQS
LQNPVATPQIVKKLPSEGLERYLESIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=581185 I6L25_RS14525 WP_004710949.1 3104900..3106321(+) (pilR) [Acinetobacter nosocomialis strain FDAARGOS 1395]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAGGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGGTTAGAGTTAGTCAAACATGTCTCTCAAAATTATACAAACACACCCATT
GCGGTTTTAACTGCTTACGGCAATATGGATATTGCAATTGCCGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAGAAAGCCTTAAATCGGCAAAAAATAGAGCATGATTTTGCAGAGAGTG
CTCTAGAAAACAAATTATTAATCGGCCGCTCTCAGCCTATTCAACAACTACGCATCGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACTGGCGAGTCTGGAACAGGTAAAGAAGTGGTTGCCAACCTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGGCCTTTTATTGCGATTAACTGTGGCGCTATTCCAACTGAACTGATGGAAAGCGAGCTGTTCGGACATAAAA
AAGGCAGTTTTACTGGAGCGACTCAAGACAAACAGGGCCTCATTTTATCTGCTCATGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTTAGTATGCAGGTTAAATTACTACGCGCAGTACAAGAAAAAAAGATTCGTCCTGTCGGTTCTGA
TCAGGAAATTGATGTTGATTTTCGGGTGATTAGCGCGAGTCATCAAGACTTAGATTTATTGGTTAGACAAGGCAAATTTC
GTCAGGATTTATTCTTCCGTATCCATGTTATGGATCTCATGTTACCGCCTTTACGCGAACGTGGTGAAGATGTCTTGTTA
CTTGCGAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACCCCACTTAAACAATTAACTGAGGCTGCTGAAACTTA
TCTGCTACAACAACACTTTCCCGGCAATGTTCGCGAATTAAGAAATATGATTGAGCGAGCAATTACTTTAAGTGACGATG
CCAATATTGATGTACCGCATTTGCACCCAGCCCCTTTAAGAGCAAATATTTCTAATTCAATCGCAACGGTATCTCAAAGC
TTGCAGAATCCCGTAGCTACGCCACAGATTGTAAAAAAATTACCAAGTGAGGGTCTAGAACGTTATTTAGAGAGTATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAATCGAACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GTTCTTTACGCTACCGTTTGAAGAAATTTGGGTTAGATACTGAAACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

94.926

100

0.949
  pilR Pseudomonas aeruginosa PAK

50.109

97.04

0.486