Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   STO1_RS07940 Genome accession   NZ_AP018338
Coordinates   1538465..1539514 (-) Length   349 a.a.
NCBI ID   WP_096422735.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1533465..1544514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS07910 (STO1_015160) - 1534599..1534898 (-) 300 WP_057489397.1 YlxQ-related RNA-binding protein -
  STO1_RS07915 (STO1_015170) rnpM 1534891..1535184 (-) 294 WP_000857560.1 RNase P modulator RnpM -
  STO1_RS07920 (STO1_015180) nusA 1535206..1536342 (-) 1137 WP_000032278.1 transcription termination factor NusA -
  STO1_RS07925 (STO1_015190) rimP 1536385..1536864 (-) 480 WP_084911995.1 ribosome maturation factor RimP -
  STO1_RS07930 (STO1_015200) trmB 1536991..1537626 (-) 636 WP_096422733.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  STO1_RS07935 (STO1_015210) ccrZ 1537623..1538417 (-) 795 WP_000363023.1 cell cycle regulator CcrZ -
  STO1_RS07940 (STO1_015220) pptB 1538465..1539514 (-) 1050 WP_096422735.1 ABC transporter permease Regulator
  STO1_RS07945 (STO1_015230) pptA 1539511..1540242 (-) 732 WP_096422737.1 ABC transporter ATP-binding protein Regulator
  STO1_RS07950 (STO1_015240) - 1540310..1540720 (+) 411 WP_096422739.1 HIT family protein -
  STO1_RS07955 (STO1_015250) - 1540730..1541017 (+) 288 WP_096422741.1 hypothetical protein -
  STO1_RS07960 (STO1_015260) - 1541085..1541738 (+) 654 WP_172843652.1 hypothetical protein -
  STO1_RS07965 (STO1_015270) dnaJ 1541816..1542952 (-) 1137 WP_001066316.1 molecular chaperone DnaJ -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40241.09 Da        Isoelectric Point: 9.9307

>NTDB_id=58100 STO1_RS07940 WP_096422735.1 1538465..1539514(-) (pptB) [Streptococcus oralis subsp. tigurinus strain osk_001]
MKDLFLKRKQAFRKECVGYLRYVLNDHFVLFLLVLIGFLSYQYSQLLQDFPENHWPILLFLGIVSALLLAWGGIATYMEA
SDKLFLLVSEEEVKSHLKGQTTRSLVFWLFVQTLFLLLFAPLFLAMGYGLPIFLSYVLLLGAGKYLLFRQKASKFFTETG
LDWDYVISQESKRKQILLRFFALFTQVKGVSNSVKRRAYLDFILKTVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLFLS
LLAVIFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLEKGEKEKGLKQIVVGVGSAVLLLELLVGAVVFQG
KIALLALVGASLFLQLFYLPYQLKRLVDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=58100 STO1_RS07940 WP_096422735.1 1538465..1539514(-) (pptB) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAAAGACTTGTTTTTAAAGCGAAAGCAGGCTTTTCGTAAGGAGTGTGTAGGTTATCTGCGTTATGTTCTCAATGACCA
CTTTGTCTTGTTCCTACTAGTTCTCATCGGTTTTCTATCTTACCAGTACAGTCAACTCTTGCAAGATTTTCCTGAAAATC
ACTGGCCCATCCTCTTGTTTTTGGGGATTGTATCTGCCTTGCTTTTGGCTTGGGGAGGGATTGCCACTTATATGGAGGCA
TCTGACAAGCTCTTTCTCTTAGTCAGTGAAGAAGAGGTCAAGTCCCACCTTAAAGGGCAGACGACGCGCTCACTGGTCTT
TTGGCTCTTTGTCCAAACCCTTTTCTTGCTTTTATTTGCGCCCTTATTTTTAGCCATGGGCTATGGCTTGCCTATCTTTC
TTTCCTACGTGCTTTTATTGGGAGCTGGGAAATATCTCCTCTTTCGCCAAAAAGCCAGTAAATTTTTTACAGAGACTGGG
CTTGACTGGGACTATGTGATCTCTCAAGAAAGCAAACGCAAGCAAATTTTGCTTCGTTTCTTTGCTCTCTTTACTCAGGT
CAAGGGCGTTTCAAATAGTGTCAAACGTCGCGCTTATCTAGATTTCATCCTAAAGACTGTTCAAAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTCCGCTCTTATCTGCGAAATGGAGACCTCTTTGCCCTCAGTCTCCGCCTCCTCTTCCTATCC
TTGTTAGCTGTGATCTTTATTGAGCAAGCTTGGATCGCGACAGCAGTAGTAGTTTTATTTAACTATCTCCTGCTCTTTCA
GTTACTGGCCCTCTATCATGCCTTTGACTACCAGTACTTGACTCAGCTCTTTCCACTAGAAAAAGGGGAGAAAGAGAAGG
GATTGAAACAGATTGTAGTCGGTGTGGGAAGTGCAGTTCTTTTGTTAGAATTGCTGGTCGGAGCAGTGGTTTTTCAAGGG
AAAATAGCCTTGTTGGCTCTTGTAGGGGCTAGTCTCTTCCTACAATTGTTTTATTTACCTTACCAACTAAAAAGATTGGT
TGACGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.286

100

0.464


Multiple sequence alignment