Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6L24_RS01905 Genome accession   NZ_CP077369
Coordinates   389662..390297 (+) Length   211 a.a.
NCBI ID   WP_005101225.1    Uniprot ID   A0AAW3VED4
Organism   Acinetobacter lwoffii strain FDAARGOS 1394     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384662..395297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L24_RS01895 (I6L24_01895) - 386781..387596 (-) 816 WP_216986339.1 NAD-dependent epimerase/dehydratase family protein -
  I6L24_RS01900 (I6L24_01900) recG 387630..389675 (+) 2046 WP_004645042.1 ATP-dependent DNA helicase RecG -
  I6L24_RS01905 (I6L24_01905) comF 389662..390297 (+) 636 WP_005101225.1 ComF family protein Machinery gene
  I6L24_RS01910 (I6L24_01910) - 390302..390703 (-) 402 WP_005108590.1 NUDIX hydrolase -
  I6L24_RS01915 (I6L24_01915) - 390734..391324 (-) 591 WP_216986608.1 TIGR00730 family Rossman fold protein -
  I6L24_RS01920 (I6L24_01920) - 391477..392490 (+) 1014 WP_004732304.1 CorA family divalent cation transporter -
  I6L24_RS01925 (I6L24_01925) - 392597..392887 (-) 291 WP_071850897.1 STAS domain-containing protein -
  I6L24_RS01930 (I6L24_01930) - 392903..393541 (-) 639 WP_004281529.1 phospholipid-binding protein MlaC -
  I6L24_RS01935 (I6L24_01935) - 393560..394237 (-) 678 WP_216986340.1 outer membrane lipid asymmetry maintenance protein MlaD -
  I6L24_RS01940 (I6L24_01940) mlaE 394237..395016 (-) 780 WP_216986341.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24389.55 Da        Isoelectric Point: 9.4810

>NTDB_id=580971 I6L24_RS01905 WP_005101225.1 389662..390297(+) (comF) [Acinetobacter lwoffii strain FDAARGOS 1394]
MPMFKLLQHGKSWLTRLQPCQLCLTDHQSIHSVCEDCWRQLPWAHQTIQRQEMQFQIACDYAYPMDRLIQLFKYEQKLHL
QNLLAGVLLSLDLPKVSAIVPMPISNERLAERGYNQSLVLAKHVAKQLNVPIWQPVRRMKQHSQKGLSRLERIEDIQSQF
QISTISKLRYRRVLIIDDVVTTGSSIRALSQTLEQLGCQKVYAACLAGAQI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=580971 I6L24_RS01905 WP_005101225.1 389662..390297(+) (comF) [Acinetobacter lwoffii strain FDAARGOS 1394]
ATGCCTATGTTTAAATTACTGCAACATGGAAAATCCTGGCTGACCCGCTTACAGCCCTGCCAGCTCTGTCTGACCGATCA
TCAGTCCATTCATTCAGTCTGTGAAGATTGCTGGCGACAATTACCCTGGGCACATCAAACCATTCAACGGCAGGAAATGC
AGTTCCAGATTGCCTGCGACTATGCTTACCCGATGGACCGGCTGATTCAACTGTTTAAATATGAACAGAAGCTGCATTTG
CAAAATTTACTGGCAGGTGTGCTGTTAAGTTTAGACCTACCTAAAGTCAGTGCGATAGTACCGATGCCGATCTCGAATGA
GCGTCTGGCTGAGCGCGGTTATAATCAATCTCTAGTGCTGGCCAAACATGTGGCAAAACAGTTGAATGTACCCATCTGGC
AACCTGTTCGACGAATGAAACAACACTCGCAAAAGGGCCTAAGCCGGCTGGAGCGGATTGAAGACATCCAATCACAATTC
CAGATCAGTACTATTTCCAAGCTGCGTTACCGTCGGGTGCTGATTATTGATGATGTGGTGACGACCGGCAGCTCGATTCG
AGCACTGAGCCAAACACTTGAACAACTGGGCTGTCAAAAAGTTTATGCAGCCTGTCTGGCAGGTGCTCAAATCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.386

98.104

0.592
  comF Acinetobacter baumannii D1279779

59.903

98.104

0.588