Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6L30_RS12995 Genome accession   NZ_CP077365
Coordinates   2750322..2750957 (-) Length   211 a.a.
NCBI ID   WP_216984488.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain FDAARGOS 1400     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2745322..2755957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L30_RS12960 (I6L30_12960) mlaE 2745650..2746426 (+) 777 WP_004705340.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  I6L30_RS12965 (I6L30_12965) - 2746426..2747109 (+) 684 WP_019457797.1 outer membrane lipid asymmetry maintenance protein MlaD -
  I6L30_RS12970 (I6L30_12970) - 2747136..2747777 (+) 642 WP_039253560.1 phospholipid-binding protein MlaC -
  I6L30_RS12975 (I6L30_12975) - 2747789..2748076 (+) 288 WP_019457795.1 lipid asymmetry maintenance protein MlaB -
  I6L30_RS12980 (I6L30_12980) - 2748151..2749164 (-) 1014 WP_004705344.1 magnesium and cobalt transport protein CorA -
  I6L30_RS12985 (I6L30_12985) - 2749322..2749903 (+) 582 WP_216984487.1 TIGR00730 family Rossman fold protein -
  I6L30_RS12990 (I6L30_12990) - 2749918..2750316 (+) 399 WP_068932463.1 NUDIX hydrolase -
  I6L30_RS12995 (I6L30_12995) comF 2750322..2750957 (-) 636 WP_216984488.1 ComF family protein Machinery gene
  I6L30_RS13000 (I6L30_13000) recG 2750950..2752995 (-) 2046 WP_216984489.1 ATP-dependent DNA helicase RecG -
  I6L30_RS13005 (I6L30_13005) - 2753016..2753843 (+) 828 WP_019457791.1 NAD-dependent epimerase/dehydratase family protein -
  I6L30_RS13010 (I6L30_13010) - 2753911..2754897 (+) 987 WP_216985835.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24492.68 Da        Isoelectric Point: 9.8479

>NTDB_id=580939 I6L30_RS12995 WP_216984488.1 2750322..2750957(-) (comF) [Acinetobacter seifertii strain FDAARGOS 1400]
MFKLFNPQYLFQLLSPCLLCEIGTRGKHSLCKECWEQLPWLKQTVQRNDLSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEILQQIKFPKVQAIVPMPISKQRLTERGFNQSLLLTKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAI
TQEKRRYRRVLIIDDVITTGSSISALSQALEQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=580939 I6L30_RS12995 WP_216984488.1 2750322..2750957(-) (comF) [Acinetobacter seifertii strain FDAARGOS 1400]
ATGTTTAAGTTGTTCAATCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTGTTATGTGAAATAGGAACGCGGGGTAA
GCACTCGCTTTGTAAAGAATGTTGGGAACAACTACCGTGGCTTAAGCAGACAGTTCAGCGTAATGATCTATCTGTTCTTG
TGGCCTGTCATTATGCCTATCCAATTAACCGCATAATTCAGCAGTTTAAATATGAACAGAAATTACATTACCAAACCTTA
CTTGCTGAAATTTTACAGCAAATAAAATTTCCTAAGGTACAGGCCATAGTACCCATGCCTATTTCTAAACAGCGTTTAAC
GGAGCGAGGTTTTAATCAATCATTATTACTTACCAAGCTTCTAAGTAAACAATTAAAAATACCCGTTTGGCAACCTGTTC
AACGCCTCAATGAGCGCTCACAAAAAGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTCGTTGCGATA
ACTCAAGAAAAACGGCGCTACCGTCGTGTGCTGATTATTGATGATGTGATCACAACAGGAAGTTCAATTTCTGCTCTAAG
TCAGGCATTAGAGCAGCTAGGTTGTACATCTATTTATGCAAGCTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

92.891

100

0.929
  comF Acinetobacter baumannii D1279779

91.943

100

0.919