Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   I6L30_RS02210 Genome accession   NZ_CP077365
Coordinates   473665..474045 (-) Length   126 a.a.
NCBI ID   WP_004701982.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain FDAARGOS 1400     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 468665..479045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L30_RS02180 (I6L30_02180) tadA 468669..469172 (-) 504 WP_068934603.1 tRNA adenosine(34) deaminase TadA -
  I6L30_RS02185 (I6L30_02185) - 469180..470304 (-) 1125 WP_019458997.1 enoyl-CoA hydratase/isomerase family protein -
  I6L30_RS02190 (I6L30_02190) ung 470301..471014 (-) 714 WP_004701973.1 uracil-DNA glycosylase -
  I6L30_RS02195 (I6L30_02195) - 471065..471661 (-) 597 WP_039251397.1 6-pyruvoyl trahydropterin synthase family protein -
  I6L30_RS02200 (I6L30_02200) gspK 471891..472850 (-) 960 WP_174724229.1 type II secretion system minor pseudopilin GspK -
  I6L30_RS02205 (I6L30_02205) xcpW 472850..473665 (-) 816 WP_216985158.1 type II secretion system minor pseudopilin GspJ Machinery gene
  I6L30_RS02210 (I6L30_02210) xcpV 473665..474045 (-) 381 WP_004701982.1 type II secretion system minor pseudopilin GspI Machinery gene
  I6L30_RS02215 (I6L30_02215) - 474035..474586 (-) 552 WP_004701984.1 type II secretion system protein -
  I6L30_RS02220 (I6L30_02220) - 474596..475204 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  I6L30_RS02225 (I6L30_02225) - 475242..476015 (-) 774 WP_077168509.1 TatD family hydrolase -
  I6L30_RS02230 (I6L30_02230) - 476033..476374 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  I6L30_RS02235 (I6L30_02235) - 476387..477367 (-) 981 WP_107973449.1 DNA polymerase III subunit delta' -
  I6L30_RS02240 (I6L30_02240) kdsB 477379..478140 (-) 762 WP_216985159.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13962.16 Da        Isoelectric Point: 9.4463

>NTDB_id=580909 I6L30_RS02210 WP_004701982.1 473665..474045(-) (xcpV) [Acinetobacter seifertii strain FDAARGOS 1400]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQV
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=580909 I6L30_RS02210 WP_004701982.1 473665..474045(-) (xcpV) [Acinetobacter seifertii strain FDAARGOS 1400]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCCTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACTCAGTCTACCTCTAATGCGATTTTACGAACCAAAGCTCAATTTGTAGCAATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAGGGCACTCAAAGTAAGCAAGTAACCTCTCAAGGTGAGACATGGCAGGTT
GATAAATCAGCTGAATCGACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACGCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

95.238

100

0.952