Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   I6L23_RS12405 Genome accession   NZ_CP077336
Coordinates   2618129..2618680 (+) Length   183 a.a.
NCBI ID   WP_370940780.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS 1393     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2613129..2623680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L23_RS12375 (I6L23_12375) kdsB 2614004..2614765 (+) 762 WP_004645470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I6L23_RS12380 (I6L23_12380) - 2614780..2615760 (+) 981 WP_004645469.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  I6L23_RS12385 (I6L23_12385) - 2615776..2616117 (+) 342 WP_004645468.1 PilZ domain-containing protein -
  I6L23_RS12390 (I6L23_12390) - 2616145..2616918 (+) 774 WP_004645467.1 TatD family hydrolase -
  I6L23_RS12395 (I6L23_12395) - 2616959..2617573 (+) 615 WP_004645466.1 TetR/AcrR family transcriptional regulator -
  I6L23_RS12400 (I6L23_12400) - 2617588..2618139 (+) 552 WP_004645465.1 type II secretion system protein -
  I6L23_RS12405 (I6L23_12405) xcpV 2618129..2618680 (+) 552 WP_370940780.1 type II secretion system minor pseudopilin GspI Machinery gene
  I6L23_RS12410 (I6L23_12410) xcpW 2618677..2619318 (+) 642 WP_004645462.1 type II secretion system minor pseudopilin GspJ Machinery gene
  I6L23_RS12415 (I6L23_12415) gspK 2619325..2620296 (+) 972 WP_004645461.1 type II secretion system minor pseudopilin GspK -
  I6L23_RS12420 (I6L23_12420) - 2620449..2621045 (+) 597 WP_004278864.1 6-pyruvoyl trahydropterin synthase family protein -
  I6L23_RS12425 (I6L23_12425) ung 2621092..2621805 (+) 714 WP_004645460.1 uracil-DNA glycosylase -
  I6L23_RS12430 (I6L23_12430) - 2621802..2622737 (+) 936 Protein_2393 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20127.17 Da        Isoelectric Point: 10.2238

>NTDB_id=580876 I6L23_RS12405 WP_370940780.1 2618129..2618680(+) (xcpV) [Acinetobacter lwoffii strain FDAARGOS 1393]
MKSRYFKQSAGSGVIKLFKASVHGFDHVCCKHRTSSCAAIGLSCATMSLRSSVTRLNRASGFTLLEVMVALAIFATAAMT
LTKVAMQYTQSTSNAILRTKAQFIALNEVAQMEINQQWMDGTASKQLTQQGETWQIDKRSEPTISPNVQRIELQVSLVNP
DTGQVTSGISSLMFFNHRMNNTP

Nucleotide


Download         Length: 552 bp        

>NTDB_id=580876 I6L23_RS12405 WP_370940780.1 2618129..2618680(+) (xcpV) [Acinetobacter lwoffii strain FDAARGOS 1393]
ATGAAATCTAGATATTTCAAGCAGAGCGCTGGGTCTGGTGTAATCAAGTTGTTTAAGGCGAGTGTTCATGGATTTGATCA
TGTGTGCTGCAAGCATAGGACTTCGTCTTGCGCTGCTATCGGACTTTCTTGCGCGACAATGTCGCTCAGGTCGAGTGTTA
CTCGACTTAATCGTGCCTCAGGTTTTACCTTATTGGAAGTTATGGTTGCACTGGCAATTTTCGCTACCGCAGCCATGACG
CTGACCAAAGTTGCAATGCAATATACCCAGTCAACCTCGAATGCCATTCTGCGCACCAAAGCACAGTTTATTGCCCTGAA
CGAAGTGGCTCAAATGGAAATCAATCAGCAATGGATGGATGGTACGGCCTCCAAACAGCTGACCCAGCAAGGCGAAACCT
GGCAAATTGACAAGCGCAGTGAACCGACGATCAGTCCCAATGTGCAGCGTATTGAACTACAGGTCAGTCTGGTGAATCCG
GATACCGGCCAGGTTACATCCGGGATCAGCAGTTTAATGTTCTTTAATCATCGCATGAACAATACGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(57-81)

Type II secretion system (T2SS), protein I (T2SSI)

(98-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

73.333

65.574

0.481