Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6L23_RS08840 Genome accession   NZ_CP077336
Coordinates   1899050..1899685 (-) Length   211 a.a.
NCBI ID   WP_004645041.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS 1393     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1894050..1904685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L23_RS08805 (I6L23_08805) mlaE 1894326..1895105 (+) 780 WP_004645033.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  I6L23_RS08810 (I6L23_08810) - 1895105..1895782 (+) 678 WP_004645034.1 outer membrane lipid asymmetry maintenance protein MlaD -
  I6L23_RS08815 (I6L23_08815) - 1895801..1896433 (+) 633 WP_004645035.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  I6L23_RS08820 (I6L23_08820) - 1896449..1896739 (+) 291 WP_004645036.1 STAS domain-containing protein -
  I6L23_RS08825 (I6L23_08825) - 1896857..1897870 (-) 1014 WP_004645037.1 CorA family divalent cation transporter -
  I6L23_RS08830 (I6L23_08830) - 1898023..1898613 (+) 591 WP_004645038.1 TIGR00730 family Rossman fold protein -
  I6L23_RS08835 (I6L23_08835) - 1898644..1899045 (+) 402 WP_004645039.1 NUDIX hydrolase -
  I6L23_RS08840 (I6L23_08840) comF 1899050..1899685 (-) 636 WP_004645041.1 ComF family protein Machinery gene
  I6L23_RS08845 (I6L23_08845) recG 1899672..1901717 (-) 2046 WP_004645042.1 ATP-dependent DNA helicase RecG -
  I6L23_RS08850 (I6L23_08850) - 1901751..1902563 (+) 813 WP_004645043.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24356.54 Da        Isoelectric Point: 9.2581

>NTDB_id=580871 I6L23_RS08840 WP_004645041.1 1899050..1899685(-) (comF) [Acinetobacter lwoffii strain FDAARGOS 1393]
MPMFKLLEHGKLWLTRLQPCQLCLTDHQAIHSVCEDCWRQLPWTHQTIQRQEMQFQIACNYAYPMDRLIQLFKYEQKLHL
QNLLAGALLSLDLPKVSAIVPMPISNERLAERGYNQSLVLAKHVAKQLNVPIWQPITRLKQHSQKGLSRLERIEDIQSQF
QISTISKLRYRRVLIIDDVVTTGSSIRALSQTLEQLGCQKIYAACLAGAQI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=580871 I6L23_RS08840 WP_004645041.1 1899050..1899685(-) (comF) [Acinetobacter lwoffii strain FDAARGOS 1393]
ATGCCTATGTTTAAACTACTGGAACATGGAAAACTCTGGCTGACTCGCCTACAACCCTGCCAGCTGTGTCTAACCGATCA
TCAGGCCATTCATTCAGTCTGTGAAGATTGCTGGCGACAATTACCCTGGACACATCAAACCATTCAACGACAGGAAATGC
AGTTCCAGATTGCCTGCAACTATGCCTACCCGATGGATCGTTTAATTCAACTGTTTAAATATGAACAGAAACTGCATTTG
CAAAATTTACTGGCAGGTGCACTGTTAAGTTTAGACCTGCCTAAAGTCAGTGCAATAGTACCGATGCCGATCTCGAATGA
GCGTCTGGCCGAGCGCGGTTATAATCAATCTTTGGTACTGGCCAAACATGTGGCAAAACAGCTGAATGTACCCATCTGGC
AACCGATTACCCGACTAAAACAACATTCACAGAAAGGTCTAAGCCGACTGGAGCGGATTGAAGACATCCAGTCGCAATTC
CAGATCAGCACCATTTCCAAGCTGCGGTATCGTCGGGTGCTGATTATTGATGATGTGGTGACAACCGGCAGTTCGATTCG
GGCACTGAGCCAAACACTTGAACAACTGGGCTGTCAAAAAATTTATGCAGCCTGTCTGGCAGGCGCGCAAATCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.87

98.104

0.597
  comF Acinetobacter baumannii D1279779

60.386

98.104

0.592