Detailed information NTG0580862

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6L23_RS08205
• Genome accession: NZ_CP077336
• Coordinates: 1765712..1766572 (-)
• Length: 286 a.a.
• NCBI ID: WP_004281094.1
• Uniprot ID: N9QGW2
• Organism: Acinetobacter lwoffii strain FDAARGOS 1393
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1760712..1771572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L23_RS08180 (I6L23_08180)	recN	1760848..1762509 (-)	1662	WP_004644925.1	DNA repair protein RecN	-
I6L23_RS08185 (I6L23_08185)	-	1762952..1763275 (+)	324	WP_004281089.1	pyrimidine/purine nucleoside phosphorylase	-
I6L23_RS08190 (I6L23_08190)	rlmB	1763410..1764159 (+)	750	WP_004281091.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
I6L23_RS08195 (I6L23_08195)	-	1764166..1765089 (+)	924	WP_004644926.1	DMT family transporter	-
I6L23_RS08200 (I6L23_08200)	coaE	1765111..1765710 (-)	600	WP_004281093.1	dephospho-CoA kinase	-
I6L23_RS08205 (I6L23_08205)	pilD	1765712..1766572 (-)	861	WP_004281094.1	prepilin peptidase	Machinery gene
I6L23_RS08210 (I6L23_08210)	pilC	1766572..1767801 (-)	1230	WP_004281096.1	type II secretion system F family protein	Machinery gene
I6L23_RS08215 (I6L23_08215)	pilB	1767833..1769542 (-)	1710	WP_004644929.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6L23_RS08220 (I6L23_08220)	tpiA	1769820..1770611 (+)	792	WP_004281100.1	triose-phosphate isomerase	-
I6L23_RS08225 (I6L23_08225)	secG	1770625..1770954 (+)	330	WP_004281101.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32010.35 Da
• Isoelectric Point: 8.0624

>NTDB_id=580862 I6L23_RS08205 WP_004281094.1 1765712..1766572(-) (pilD) [Acinetobacter lwoffii strain FDAARGOS 1393]
MHDFLQYFIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQMFLHPEQPVIDETKLSLSKPASACPKCHQP
IRWYQNIPVISWLVLRGKCSNCQNPISIRYPLVEILTAVCALLVVAVFGPTLQMLFGLILTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYALYTLPGAAIWGYIIGFLCLWVVYYAFKIVTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=580862 I6L23_RS08205 WP_004281094.1 1765712..1766572(-) (pilD) [Acinetobacter lwoffii strain FDAARGOS 1393]
ATGCACGATTTTCTTCAATATTTTATTCAAAACCCAACGGCGTTGTATATCGCAGTTGGGCTTTTTAGTTTATGTATCGG
CAGCTTTCTGAATGTCGTGATTTACCGCACTCCCAAGATGATGGAACAGGAATGGCGTACTGATTGCCAGATGTTCCTGC
ATCCGGAACAGCCGGTGATTGATGAAACTAAGTTAAGTTTAAGCAAACCCGCTTCAGCTTGCCCCAAGTGTCATCAGCCA
ATCCGCTGGTACCAGAATATTCCCGTCATTAGCTGGCTGGTCCTGCGCGGAAAATGTAGCAACTGCCAGAATCCGATCAG
CATCCGTTATCCTTTGGTTGAAATTCTGACGGCAGTTTGTGCACTCCTTGTCGTAGCAGTATTTGGCCCTACCCTACAAA
TGCTGTTTGGCCTGATCCTGACTTATGTGCTGATCGCACTCACTTTTATTGATTTTGACACCCAGTTATTGCCTGACCGT
TATACTTTACCCTTGGCCGCGCTAGGTTTGGGGGTAAATAGTTATGCACTTTATACCTTACCCGGTGCTGCCATCTGGGG
CTATATTATTGGTTTCCTGTGTCTGTGGGTGGTGTATTATGCATTTAAAATCGTTACCGGCAAGGAAGGTATGGGCTATG
GCGATTTTAAATTGCTTGCCGCCCTGGGTGCCTGGATGGGGCCTTTATTACTGCCTTTAATTGTGCTGCTGTCTTCTCTG
GTTGGTGCGATTATCGGGATTATCCTACTGAAAGTCCGCAAGGAAAATCAGCCTTTTGCCTTTGGTCCCTATATCGCGAT
TGCCGGCTGGATTGCTTTTTTGTGGGGCGAGCAGATTATGAAAGTGTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

3D structure

• AlphaFold DB: N9QGW2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	80	99.65	0.797
pilD	Acinetobacter baumannii D1279779	79.649	99.65	0.794
pilD	Vibrio cholerae strain A1552	51.237	98.951	0.507
pilD	Vibrio campbellii strain DS40M4	49.826	100	0.5
pilD	Neisseria gonorrhoeae MS11	46.909	96.154	0.451